Os03g0336600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reticulon family protein.
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Os03g0336600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reticulon family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.13 | 0.221 | 10.3 | -0.809 | 0.365 | 0.564 | -0.222 | -1.65 | -0.0808 | 5.25 | 8.079 | 1888 | -- | -- |
| 24.06 | 0.228 | 10.2 | -0.511 | 0.316 | 0.548 | -0.162 | -- | 0.0131 | 5.01 | 3.962 | 4304 | -- | -- |
| 22.24 | 0.22 | 10.3 | -0.808 | 0.362 | 0.557 | -- | -1.58 | -0.0794 | 5.44 | 7.789 | 2039 | -- | -- |
| 24.13 | 0.229 | 10.2 | -0.509 | 0.314 | 0.548 | -- | -- | 0.0139 | 5.18 | 4.408 | 4280 | -- | -- |
| 27.18 | 0.243 | 10.3 | -0.82 | -- | 0.557 | -- | -1.39 | -0.0786 | -- | 11.26 | 2705 | -- | -- |
| 29.49 | 0.255 | 10.2 | -0.257 | 0.337 | -- | -0.185 | -- | 0.121 | 4.96 | -- | -- | -- | -- |
| 29.58 | 0.255 | 10.2 | -0.256 | 0.336 | -- | -- | -- | 0.122 | 4.96 | -- | -- | -- | -- |
| 29.17 | 0.252 | 10.2 | -0.513 | -- | 0.586 | -- | -- | 0.0144 | -- | 10.49 | 4151 | -- | -- |
| 28.78 | 0.25 | 10.2 | -- | 0.337 | 0.36 | -- | -- | 0.097 | 5.05 | 14.51 | 1730 | -- | -- |
| 35.52 | 0.278 | 10.2 | -0.244 | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
| 31.31 | 0.262 | 10.2 | -- | 0.331 | -- | -- | -- | 0.15 | 4.99 | -- | -- | -- | -- |
| 33.63 | 0.27 | 10.2 | -- | -- | 0.421 | -- | -- | 0.0956 | -- | 5.865 | 1287 | -- | -- |
| 37.09 | 0.284 | 10.2 | -- | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.56 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 21.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 21.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 16 |
| 19 | 21.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 20 |
| 44 | 21.89 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 45 | 21.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 49 | 21.90 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 62 | 21.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 64 | 21.91 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 76 | 21.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 15 |
| 91 | 21.95 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 148 | 22.03 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 167 | 22.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 179 | 22.06 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 194 | 22.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 218 | 22.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 16 |
| 224 | 22.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 14 |
| 225 | 22.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 14 |
| 308 | 22.14 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 331 | 22.15 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 337 | 22.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 6 |
| 365 | 22.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 369 | 22.16 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 376 | 22.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 413 | 22.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 9 |
| 635 | 22.23 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 644 | 22.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 679 | 22.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 686 | 22.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 724 | 22.25 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 739 | 22.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 9 |
| 864 | 22.28 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 868 | 22.28 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 894 | 22.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 900 | 22.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 941 | 22.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 947 | 22.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 951 | 22.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 953 | 22.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 23 |