BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0336600 Os03g0336600|AK061202
(231 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0336600 Reticulon family protein 398 e-111
Os02g0265900 Reticulon family protein 148 3e-36
Os06g0503400 Reticulon family protein 131 3e-31
Os07g0142000 Reticulon family protein 131 4e-31
Os05g0526400 Reticulon family protein 121 5e-28
Os01g0736900 Reticulon family protein 119 2e-27
Os05g0550100 119 2e-27
Os03g0781700 Reticulon family protein 114 6e-26
Os04g0670000 Reticulon family protein 104 5e-23
Os05g0312500 Reticulon family protein 102 3e-22
Os01g0226300 Reticulon family protein 100 7e-22
Os01g0139000 Reticulon family protein 98 6e-21
Os04g0367400 Reticulon family protein 94 6e-20
Os01g0851300 Reticulon family protein 92 4e-19
Os01g0691400 Reticulon family protein 68 4e-12
>Os03g0336600 Reticulon family protein
Length = 231
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/213 (92%), Positives = 197/213 (92%)
Query: 19 IESSAADPSTSGTASRLSVHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLS 78
IESSAADPSTSGTASRLSVHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLS
Sbjct: 19 IESSAADPSTSGTASRLSVHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLS 78
Query: 79 FLTVCSDVLLILIVVQFIRIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMI 138
FLTVCSDVLLILIVVQFIRIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMI
Sbjct: 79 FLTVCSDVLLILIVVQFIRIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMI 138
Query: 139 AHDITLGKDXXXXXXXXXXXXXXXXIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRY 198
AHDITLGKD IGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRY
Sbjct: 139 AHDITLGKDFRLFFQVVLLLWLLSVIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRY 198
Query: 199 AGMVHRNISRHYKIVDENVMSRLPRSFIRDKED 231
AGMVHRNISRHYKIVDENVMSRLPRSFIRDKED
Sbjct: 199 AGMVHRNISRHYKIVDENVMSRLPRSFIRDKED 231
>Os02g0265900 Reticulon family protein
Length = 230
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 112/195 (57%)
Query: 36 SVHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQF 95
SVH+ GGGKAAD++LWK +++ VI GAT+ W LFE FLT+ S VL+ ++ + F
Sbjct: 34 SVHQALGGGKAADVLLWKDKKISAAVIGGATVLWVLFEVVDYHFLTLISHVLIGVLAILF 93
Query: 96 IRIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHDITLGKDXXXXXXXX 155
+ K + K P +PE+ +SE++ N A + R +N L + +I+LG D
Sbjct: 94 LWSKATIFIKKSPPNIPEVKISEDLAVNVALALRTDINQALHLLREISLGHDLMKFLGVI 153
Query: 156 XXXXXXXXIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGMVHRNISRHYKIVDE 215
IG+ C +TL Y + L T+P LY K Q++VD +AG H +SR Y ++D
Sbjct: 154 VALWILSEIGSLCDFLTLFYVAVLMLHTVPILYHKYQDKVDHFAGKAHVELSRQYSVLDA 213
Query: 216 NVMSRLPRSFIRDKE 230
V+S++PR +DK+
Sbjct: 214 KVLSKIPRGPAKDKK 228
>Os06g0503400 Reticulon family protein
Length = 265
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 106/196 (54%)
Query: 36 SVHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQF 95
SVH+ GGGK AD++LWK + + VI GAT+ W LFE LT+ S V++ + + F
Sbjct: 70 SVHKALGGGKTADVLLWKDKKTSAVVIGGATVIWILFEVLDYHLLTLLSHVMIGALAILF 129
Query: 96 IRIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHDITLGKDXXXXXXXX 155
+ K + K P +P + + E++ N + + R +N L + +I LG D
Sbjct: 130 LWSKATTFIKKSPPDIPVVQIPEDVAVNVSRALRSDINRALHLFREIALGHDLKKFLGVI 189
Query: 156 XXXXXXXXIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGMVHRNISRHYKIVDE 215
+G+ C +TL Y + L T+P LY K Q++VD +AG H +HY+++D
Sbjct: 190 VALWVLSEVGSCCDFLTLIYVAVLMLHTVPILYDKYQDKVDHFAGRAHSEACKHYEVLDA 249
Query: 216 NVMSRLPRSFIRDKED 231
V+S++PR ++ K++
Sbjct: 250 KVLSKIPRGPVKPKKN 265
>Os07g0142000 Reticulon family protein
Length = 246
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 113/211 (53%), Gaps = 5/211 (2%)
Query: 25 DPSTSGTASRL-----SVHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSF 79
D S S A RL SVH + GGGK+AD++LW+ +++ V+ AT W FE F
Sbjct: 34 DGSISDQAKRLFGGQKSVHHVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWLDYHF 93
Query: 80 LTVCSDVLLILIVVQFIRIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIA 139
LT+ VL++ +VVQF AG+LN P +P + L +E+ +N ++ +VN L
Sbjct: 94 LTIACFVLVLGMVVQFAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGTL 153
Query: 140 HDITLGKDXXXXXXXXXXXXXXXXIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYA 199
D++ G+D IG++C+ +T+ Y G + T+P LY KNQE+VD +
Sbjct: 154 QDVSCGRDLKNFLLVIAGFFAAAIIGSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFL 213
Query: 200 GMVHRNISRHYKIVDENVMSRLPRSFIRDKE 230
+ Y+ +D+ V+ ++P+ I+ K+
Sbjct: 214 YNTLGLLQNQYQKLDKGVLGKVPKGIIKLKK 244
>Os05g0526400 Reticulon family protein
Length = 251
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 102/194 (52%)
Query: 37 VHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQFI 96
VH + GGGK AD+ LW+ ++++GV+ GAT W LFE LT+ +++ + + F+
Sbjct: 57 VHSVLGGGKPADLFLWRNKKISVGVLAGATAIWLLFEVMDYHLLTLLCHCIILTLAMLFL 116
Query: 97 RIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHDITLGKDXXXXXXXXX 156
+ +NK P +PE+ + E++ N A S R ++N +I G D
Sbjct: 117 WSNASTFINKSPPNIPEVKIPEDLAVNVARSLRFEINRGFATLREIGQGHDLKKFLIVVV 176
Query: 157 XXXXXXXIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGMVHRNISRHYKIVDEN 216
+G+ C+ +TL Y + L T+P LY K ++Q+D + + ++Y I DE
Sbjct: 177 GLWVLSVLGSCCNFLTLFYIVFMVLYTVPVLYEKYEDQIDAFGEKAMIELKKYYAIFDEK 236
Query: 217 VMSRLPRSFIRDKE 230
+S++P+ +++K+
Sbjct: 237 CLSKIPKGPLKNKK 250
>Os01g0736900 Reticulon family protein
Length = 253
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 103/194 (53%)
Query: 37 VHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQFI 96
VH + GGGK AD++LW+ +++ GV+ GAT W LFE LT+ L++ + V F+
Sbjct: 59 VHSVLGGGKPADLVLWRNKKISGGVLAGATAIWLLFEIMEYHLLTLVCHCLILSLAVLFL 118
Query: 97 RIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHDITLGKDXXXXXXXXX 156
+ ++K P +PE+ + E++ N A S R ++N +I G+D
Sbjct: 119 WSNASTFIHKSPPNIPEVKIPEDLTVNIALSLRYEINRGFATLREIGHGRDLKKFLIVIA 178
Query: 157 XXXXXXXIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGMVHRNISRHYKIVDEN 216
+G+ C+ +TL Y +AL T+P LY K +++VD + ++Y + +E
Sbjct: 179 GLWILSVLGSSCNFLTLFYIVFVALYTVPVLYEKYEDKVDAFGEKAEIEFKKYYALFEEK 238
Query: 217 VMSRLPRSFIRDKE 230
+S++P+ ++DK+
Sbjct: 239 CLSKIPKGPLKDKK 252
>Os05g0550100
Length = 788
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 108/194 (55%)
Query: 37 VHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQFI 96
VH+I GG K ADI+LW+ ++ G++ GAT+ W+LF+ + + +T+ + L+ ++V FI
Sbjct: 26 VHKILGGRKVADIMLWRDRNLSAGILAGATLIWFLFDVAEYNLVTLLCHIALLGMLVLFI 85
Query: 97 RIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHDITLGKDXXXXXXXXX 156
A L ++ P +PE+++SE A + KV + + +DI+ GK+
Sbjct: 86 WSNAAPLFDRAPPRIPEVIVSEHAFRELALTLHSKVAHFSAVLYDISCGKELRKFLAVIG 145
Query: 157 XXXXXXXIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGMVHRNISRHYKIVDEN 216
IG CS TL Y G + +T+PALY + + +VD +++ + YK +D N
Sbjct: 146 SLWILAVIGETCSFTTLLYVGFLCALTLPALYERYETEVDHLVAKGGQDLKKFYKKIDSN 205
Query: 217 VMSRLPRSFIRDKE 230
V++++PR ++ KE
Sbjct: 206 VLNKIPRGPVKTKE 219
>Os03g0781700 Reticulon family protein
Length = 247
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 105/195 (53%)
Query: 36 SVHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQF 95
++HR+ GGGK AD++LW+ +++ V+ AT W FE FLT+ S L++ +VVQF
Sbjct: 51 TIHRVLGGGKPADVLLWRNKKISSSVLALATAIWVFFEWLDYHFLTIVSFALVLGMVVQF 110
Query: 96 IRIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHDITLGKDXXXXXXXX 155
+ + L+ P +P + L EE+ N A + +VN L D++ ++
Sbjct: 111 VWSNFSSALSGSPSKVPRVELPEELFVNIAVAVGTQVNKFLSFLQDVSCERNLKHFVLAI 170
Query: 156 XXXXXXXXIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGMVHRNISRHYKIVDE 215
IG +C+ +T+ Y G ++ T+P LY K ++QVD + + + Y+ +D+
Sbjct: 171 VGLWAAAVIGGWCNFLTVIYIGFVSAHTLPVLYEKYEDQVDDFLYNILGLLRDQYQKLDQ 230
Query: 216 NVMSRLPRSFIRDKE 230
V+S++P+ ++ K+
Sbjct: 231 GVLSKIPKGNMKFKK 245
>Os04g0670000 Reticulon family protein
Length = 199
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 102/180 (56%)
Query: 30 GTASRLSVHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSFLTVCSDVLLI 89
T SR S+H + GGG AD++LW+R V+ + GAT W+LFE++G SF +V ++ LL+
Sbjct: 2 ATTSRRSLHALLGGGAVADLVLWRRRNVSAAAVAGATAVWFLFERAGYSFPSVMANALLL 61
Query: 90 LIVVQFIRIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHDITLGKDXX 149
L+ + F K A LLN+ PLP+L +S+ +V AA V +N +L + HDI + +D
Sbjct: 62 LVAILFFWAKSASLLNRPLPPLPKLEVSDVVVEKAADRALVWINKVLAVGHDIAIKRDRS 121
Query: 150 XXXXXXXXXXXXXXIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGMVHRNISRH 209
IG + +TL Y G + + +P LY K Q+QVD GM H +SRH
Sbjct: 122 VFIKVILILWVVSYIGMLFNFLTLIYIGVMFSLLVPPLYEKYQDQVDEKIGMAHSVLSRH 181
>Os05g0312500 Reticulon family protein
Length = 251
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%)
Query: 37 VHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQFI 96
+H + GGGKAAD++LW+ + + ++ G T+ W LFE G LT L++ + V F+
Sbjct: 58 LHHVLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLMVFLTVCFV 117
Query: 97 RIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHDITLGKDXXXXXXXXX 156
A +N+ P P+ +LSE A R ++N + + GKD
Sbjct: 118 WANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDLKTYLMTVA 177
Query: 157 XXXXXXXIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGMVHRNISRHYKIVDEN 216
IG+ S +TL+Y + T+P LY K +++VD + + Y ++D
Sbjct: 178 GLWFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKKQYAVLDHK 237
Query: 217 VMSRLP 222
++S++P
Sbjct: 238 LLSKIP 243
>Os01g0226300 Reticulon family protein
Length = 178
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%)
Query: 57 VTIGVIFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQFIRIKVAGLLNKQPRPLPELVL 116
++ GV+ GAT W LFE G LT L+ + + F+ + +NK P +PE+++
Sbjct: 4 ISAGVLGGATAIWILFELLGYHLLTFVCHGLIFSLGLLFLWSNASSFINKSPPRIPEVII 63
Query: 117 SEEMVSNAAASFRVKVNNMLMIAHDITLGKDXXXXXXXXXXXXXXXXIGNFCSSITLAYF 176
E++V N A S R ++N I LG+D +G+ C+ +TL Y
Sbjct: 64 PEDLVVNIALSTRYEINRAFANLRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLTLVYI 123
Query: 177 GTIALVTIPALYSKNQEQVDRYAGMVHRNISRHYKIVDENVMSRLPRSFIRDKE 230
+ L T+P LY K ++Q+D Y I + Y ++D V+S++PR ++DK+
Sbjct: 124 VFVVLHTVPILYEKYEDQIDSYGEKGWVEIKKQYAVLDAKVLSKVPRGPLKDKK 177
>Os01g0139000 Reticulon family protein
Length = 213
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%)
Query: 37 VHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQFI 96
+H GG KAADIILW+ RV+ ++ GAT+AW+LFE + FL++ + ++ ++V FI
Sbjct: 20 LHDALGGHKAADIILWRERRVSASIVAGATVAWYLFEVAEYHFLSLACYLAMLGMLVVFI 79
Query: 97 RIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHDITLGKDXXXXXXXXX 156
+ N +PE+ +SE + ++ + +DI GKD
Sbjct: 80 WANASAFFNLPAPRIPEIFVSERTTRQVILALHSRLTWFVHRLYDIACGKDIKMFILTVF 139
Query: 157 XXXXXXXIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGMVHRNISRHYKIVDEN 216
I + SS+TL Y + +T+P +Y + +VD ++ H +D
Sbjct: 140 SLFIASVIASCFSSLTLLYLVVLGTMTLPVMYENYESEVDHLVSTAVHDLRSHVGDIDSG 199
Query: 217 VMSRLPR 223
V ++PR
Sbjct: 200 VFKKIPR 206
>Os04g0367400 Reticulon family protein
Length = 213
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 98/178 (55%), Gaps = 1/178 (0%)
Query: 43 GGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQFIRIKVAG 102
G D+++W+RG V+ ++ W LF G +FL++ S+VLL+L+ V F+ K A
Sbjct: 21 GEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYTFLSLASNVLLLLLTVLFLWAKAAR 80
Query: 103 LLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHDITLGKDXXXXXXXXXXXXXXX 162
LLN+ P+PE+ +S+++V+ AA +N + + HDI LGKD
Sbjct: 81 LLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDIALGKDSVLFYQVFLSLWIIS 140
Query: 163 XIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGMVHRNISRHYKIVDENVMSR 220
IG+ TL Y +A++TIPALY K +E +DRY + N+ + Y++V E ++
Sbjct: 141 IIGSLTDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFAYLNL-QMYEMVYERFSAK 197
>Os01g0851300 Reticulon family protein
Length = 203
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 1/185 (0%)
Query: 23 AADPSTSGTASRLSVHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEK-SGLSFLT 81
A+D ++ S+H + GGG AD++LW+R V + +W LF G + L+
Sbjct: 3 ASDQGCRLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTLLS 62
Query: 82 VCSDVLLILIVVQFIRIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHD 141
S VL+I++VV F+ K A LLN+ P P+P + +SE+ +S AAA+ ++ L +
Sbjct: 63 FVSSVLMIVLVVLFVWAKAARLLNRPPPPVPLIKISEDSMSKAAAAVGNILHKALQGFEN 122
Query: 142 ITLGKDXXXXXXXXXXXXXXXXIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGM 201
I GKD +G ITL Y + +TIPAL K +E + ++
Sbjct: 123 IAHGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFLNQ 182
Query: 202 VHRNI 206
NI
Sbjct: 183 ASANI 187
>Os01g0691400 Reticulon family protein
Length = 202
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 13/160 (8%)
Query: 82 VCSDVLLILIVVQFIRIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHD 141
+C +L ++V+ FI A LL++ P +PE+++SE A + K+ + + +D
Sbjct: 42 LCQIAILAMLVI-FIWSNAAPLLDRAPPRIPEIIISEHAFREMALTVHYKLTYTVSVLYD 100
Query: 142 ITLGKDXX------------XXXXXXXXXXXXXXIGNFCSSITLAYFGTIALVTIPALYS 189
I GKD IG+ CS +L Y G + T+P LY
Sbjct: 101 IACGKDLKRFLLFWTNNQIVYDIKVVGSLLVLSAIGSSCSLTSLLYIGFLCAHTLPVLYQ 160
Query: 190 KNQEQVDRYAGMVHRNISRHYKIVDENVMSRLPRSFIRDK 229
+ + +VD +I + YK VD N+++++PR ++ K
Sbjct: 161 RYKTEVDHLVAKGSDDIKKFYKKVDSNLLNKIPRGPVKTK 200
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,165,587
Number of extensions: 212719
Number of successful extensions: 644
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 15
Length of query: 231
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 133
Effective length of database: 11,918,829
Effective search space: 1585204257
Effective search space used: 1585204257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)