Os04g0670000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reticulon family protein.
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Os04g0670000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reticulon family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.34 | 0.275 | 7.57 | 0.289 | 0.683 | 0.273 | 0.742 | 0.817 | 0.0932 | 9.76 | 0.2478 | 10531 | -- | -- |
| 34.08 | 0.272 | 7.59 | 0.214 | 0.686 | 0.474 | 0.751 | -- | 0.0883 | 9.76 | 0.5496 | 15763 | -- | -- |
| 36.14 | 0.28 | 7.56 | 0.347 | 0.68 | 0.144 | -- | 1.2 | 0.083 | 9.87 | 0.508 | 15321 | -- | -- |
| 36.07 | 0.28 | 7.59 | 0.269 | 0.681 | 0.466 | -- | -- | 0.104 | 9.9 | 0.4541 | 15554 | -- | -- |
| 63.19 | 0.37 | 7.57 | 0.37 | -- | 0.0589 | -- | 1.42 | 0.0914 | -- | 0.9286 | 17020 | -- | -- |
| 39.22 | 0.294 | 7.6 | 0.396 | 0.681 | -- | 0.723 | -- | 0.0469 | 9.76 | -- | -- | -- | -- |
| 41.17 | 0.3 | 7.6 | 0.425 | 0.676 | -- | -- | -- | 0.0489 | 9.91 | -- | -- | -- | -- |
| 63.2 | 0.37 | 7.6 | 0.249 | -- | 0.485 | -- | -- | 0.123 | -- | 0.4443 | 17005 | -- | -- |
| 36.56 | 0.282 | 7.59 | -- | 0.678 | 0.524 | -- | -- | 0.0919 | 9.87 | 1.018 | 27638 | -- | -- |
| 68.56 | 0.387 | 7.62 | 0.417 | -- | -- | -- | -- | 0.0489 | -- | -- | -- | -- | -- |
| 45.93 | 0.317 | 7.61 | -- | 0.675 | -- | -- | -- | 0.00161 | 9.86 | -- | -- | -- | -- |
| 63.66 | 0.372 | 7.61 | -- | -- | 0.537 | -- | -- | 0.0968 | -- | 1 | 27613 | -- | -- |
| 73.16 | 0.399 | 7.63 | -- | -- | -- | -- | -- | 0.00263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.29 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 2 | 31.61 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 3 | 31.68 | humidity | 80 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 6 | 31.70 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 7 | 31.72 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 37 | 31.88 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 52 | 31.99 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 54 | 32.01 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 64 | 32.08 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 70 | 32.11 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 73 | 32.12 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 74 | 32.12 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 78 | 32.13 | radiation | 20 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 84 | 32.15 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 95 | 32.18 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 99 | 32.19 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 111 | 32.24 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 128 | 32.32 | radiation | 20 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 136 | 32.34 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 146 | 32.38 | radiation | 10 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 159 | 32.39 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 180 | 32.45 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 211 | 32.49 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 20 |
| 328 | 32.59 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 17 |
| 414 | 32.68 | radiation | 20 | 43200 | > th | dose independent | sin | 9 | NA |
| 644 | 32.77 | radiation | 40 | 43200 | > th | dose independent | sin | 8 | NA |
| 721 | 32.80 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 822 | 32.82 | radiation | 10 | 43200 | > th | dose dependent | sin | 8 | NA |
| 828 | 32.82 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 12 |
| 937 | 32.87 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 962 | 32.88 | radiation | 20 | 43200 | < th | dose independent | sin | 7 | NA |