FiT-DB / Search/ Help/ Sample detail

Os06g0503400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reticulon family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.2 (0.0187) R2 : 0.697
β1 : 1.47 (0.0684) R2dD : 0.317 R2D : 0.181
β2 : 1.07 (0.0485) R2dC : 0.327 R2C : 0.253
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.618 (0.0399) R2dN8 : 0.214 R2N8 : 0.0652
σ : 0.351
deviance : 56.28
__
_____
C
peak time of C : 17
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.55 0.321 15.2 1.5 1.38 -0.681 -0.789 -0.663 0.672 16.5 11.04 286 -- --
47.04 0.319 15.2 1.5 1.37 -0.674 -1.08 -- 0.675 16.4 12.15 289 -- --
47.31 0.32 15.2 1.48 1.49 -0.689 -- -1.26 0.662 16.5 -30.9 347 -- --
49.8 0.329 15.2 1.51 1.42 -0.659 -- -- 0.681 16.7 10.46 379 -- --
84.94 0.429 15.2 1.34 -- 0.964 -- -1.3 0.486 -- -34.88 623 -- --
53.88 0.344 15.2 1.47 1.07 -- -0.995 -- 0.623 16.9 -- -- -- --
56.28 0.351 15.2 1.47 1.07 -- -- -- 0.618 17 -- -- -- --
86.67 0.434 15.2 1.39 -- 0.919 -- -- 0.51 -- -9.072 655 -- --
109.19 0.487 15.2 -- 1.23 -0.455 -- -- 0.589 17 34.3 231 -- --
116.7 0.505 15.2 1.43 -- -- -- -- 0.59 -- -- -- -- --
112.99 0.497 15.3 -- 1.05 -- -- -- 0.454 17.1 -- -- -- --
126.64 0.524 15.3 -- -- -1.17 -- -- 0.231 -- 57.96 27214 -- --
170.5 0.609 15.2 -- -- -- -- -- 0.432 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.76 radiation 40.0 90 < th dose dependent rect. 7 18
2 38.31 radiation 40.0 10 < th dose dependent rect. 7 20
4 38.57 radiation 40.0 90 < th dose independent rect. 7 18
5 38.87 radiation 40.0 90 < th dose dependent rect. 6 21
12 39.09 radiation 40.0 270 < th dose dependent rect. 5 8
16 39.30 radiation 40.0 270 < th dose independent rect. 5 20
17 39.40 radiation 30.0 10 < th dose independent rect. 7 20
19 39.44 radiation 30.0 270 < th dose independent rect. 5 8
25 39.52 radiation 30.0 270 < th dose independent rect. 5 6
35 39.66 radiation 40.0 10 < th dose independent rect. 7 18
53 39.94 radiation 40.0 270 < th dose independent rect. 5 10
96 40.51 radiation 40.0 270 < th dose independent rect. 13 11
110 40.77 radiation 40.0 270 < th dose independent rect. 11 13
141 41.07 temperature 30.0 270 < th dose independent rect. 5 6
151 41.20 temperature 15.0 270 > th dose independent rect. 10 19
152 41.20 radiation 40.0 270 < th dose dependent rect. 6 3
159 41.27 temperature 15.0 270 > th dose independent rect. 23 6
169 41.31 wind 1.0 270 > th dose independent rect. 14 10
171 41.34 precipitation 0.1 270 < th dose independent rect. 14 10
173 41.34 precipitation 0.1 270 < th dose dependent rect. 14 10
183 41.42 wind 9.0 270 < th dose independent rect. 24 14
186 41.45 radiation 40.0 10 < th dose independent rect. 7 5
188 41.45 humidity 50.0 270 > th dose dependent rect. 23 6
196 41.50 temperature 15.0 10 > th dose independent rect. 12 18
215 41.64 atmosphere 1000.0 270 > th dose independent rect. 5 5
225 41.69 atmosphere 1000.0 270 > th dose independent rect. 5 18
227 41.70 temperature 10.0 270 > th dose independent rect. 14 10
228 41.70 temperature 10.0 270 > th dose independent rect. 24 14
229 41.70 atmosphere 995.0 270 > th dose independent rect. 24 14
230 41.70 atmosphere 1015.0 270 < th dose independent rect. 24 14
257 41.81 humidity 60.0 270 > th dose independent rect. 5 6
260 41.83 atmosphere 1010.0 270 < th dose independent rect. 23 6
262 41.83 precipitation 0.1 270 < th dose independent rect. 5 18
266 41.83 precipitation 0.1 270 < th dose dependent rect. 5 18
271 41.86 atmosphere 1000.0 270 > th dose independent rect. 6 3
272 41.86 wind 9.0 270 < th dose independent rect. 14 10
274 41.87 wind 9.0 270 < th dose independent rect. 10 19
289 41.92 humidity 50.0 270 > th dose dependent rect. 5 6
293 41.94 temperature 30.0 270 < th dose independent rect. 23 6
294 41.94 humidity 50.0 270 > th dose independent rect. 23 6
297 41.94 atmosphere 995.0 270 > th dose independent rect. 23 6
298 41.94 radiation 1.0 270 < th dose independent rect. 23 6
303 41.94 precipitation 0.1 270 < th dose independent rect. 24 14
304 41.94 temperature 10.0 270 > th dose independent rect. 5 18
305 41.94 radiation 10.0 270 < th dose dependent rect. 23 6
309 41.94 precipitation 0.1 270 < th dose dependent rect. 24 14
311 41.95 wind 9.0 270 < th dose independent rect. 23 6
317 41.96 atmosphere 1015.0 270 < th dose dependent rect. 23 6
322 42.00 temperature 30.0 270 < th dose independent rect. 6 3
329 42.04 temperature 10.0 270 > th dose independent rect. 5 5
332 42.04 atmosphere 1015.0 270 < th dose independent rect. 5 5
337 42.04 wind 9.0 270 < th dose independent rect. 9 21
338 42.05 wind 9.0 270 < th dose independent rect. 5 5
342 42.07 precipitation 0.1 270 < th dose independent rect. 5 5
343 42.07 precipitation 0.1 270 < th dose independent rect. 23 6
346 42.07 humidity 50.0 270 > th dose independent rect. 24 14
349 42.07 precipitation 0.1 270 < th dose dependent rect. 5 5
350 42.07 precipitation 0.1 270 < th dose dependent rect. 23 6
357 42.12 humidity 50.0 10 > th dose independent rect. 6 6
365 42.14 humidity 60.0 270 > th dose independent rect. 6 3
371 42.15 humidity 80.0 270 > th dose independent rect. 1 3
373 42.15 atmosphere 1015.0 10 < th dose dependent rect. 12 18
376 42.17 atmosphere 995.0 270 > th dose independent rect. 14 10
379 42.17 radiation 1.0 270 < th dose dependent sin 8 NA
381 42.18 wind 9.0 270 < th dose independent rect. 6 3
382 42.18 temperature 10.0 270 > th dose independent rect. 6 3
386 42.18 atmosphere 1015.0 270 < th dose independent rect. 6 3
394 42.20 precipitation 0.1 270 < th dose independent rect. 6 3
396 42.20 precipitation 0.1 270 < th dose dependent rect. 6 3
435 42.29 precipitation 0.1 270 < th dose independent rect. 10 19
436 42.29 humidity 60.0 90 > th dose dependent rect. 1 5
440 42.29 precipitation 0.1 270 < th dose dependent rect. 10 19
445 42.31 humidity 80.0 90 > th dose independent rect. 1 5
451 42.33 wind 1.0 270 > th dose independent rect. 5 5
458 42.37 radiation 40.0 270 < th dose dependent rect. 7 1
464 42.39 atmosphere 1015.0 90 < th dose dependent rect. 1 5
473 42.42 temperature 10.0 270 > th dose dependent rect. 1 3
476 42.43 atmosphere 1000.0 10 > th dose independent rect. 6 6
481 42.44 humidity 50.0 270 > th dose dependent rect. 1 3
493 42.47 precipitation 0.1 270 < th dose independent rect. 9 21
494 42.47 precipitation 0.1 270 < th dose dependent rect. 9 21
505 42.51 atmosphere 1015.0 270 < th dose independent rect. 5 18
507 42.52 temperature 20.0 90 > th dose independent rect. 1 5
525 42.55 temperature 10.0 270 > th dose dependent rect. 6 3
526 42.56 temperature 20.0 270 > th dose independent rect. 1 3
533 42.59 wind 1.0 270 > th dose independent rect. 6 3
539 42.60 atmosphere 1015.0 270 < th dose dependent rect. 1 2
540 42.60 humidity 50.0 270 > th dose dependent rect. 6 3
544 42.62 temperature 10.0 270 > th dose independent rect. 1 3
546 42.62 temperature 30.0 270 < th dose independent rect. 1 3
547 42.62 humidity 50.0 270 > th dose independent rect. 1 3
550 42.62 atmosphere 995.0 270 > th dose independent rect. 1 3
551 42.62 atmosphere 1010.0 270 < th dose independent rect. 1 3
553 42.62 radiation 1.0 270 < th dose independent rect. 1 3
559 42.62 temperature 10.0 270 > th dose independent rect. 4 21
560 42.62 precipitation 0.1 270 < th dose independent rect. 4 21
561 42.62 radiation 1.0 270 < th dose dependent rect. 1 3
569 42.62 precipitation 0.1 270 < th dose dependent rect. 4 21
570 42.63 wind 9.0 270 < th dose independent rect. 1 3
585 42.64 atmosphere 1010.0 90 < th dose independent rect. 12 18
592 42.66 wind 1.0 270 > th dose independent rect. 5 18
597 42.69 radiation 10.0 90 < th dose independent rect. 1 5
598 42.69 radiation 40.0 90 < th dose dependent rect. 11 14
610 42.71 atmosphere 995.0 270 > th dose independent rect. 10 19
622 42.75 atmosphere 995.0 270 > th dose independent rect. 4 21
624 42.75 temperature 10.0 90 > th dose dependent rect. 1 5
627 42.76 precipitation 0.1 270 < th dose independent rect. 1 3
629 42.76 precipitation 0.1 270 < th dose dependent rect. 1 3
635 42.77 radiation 1.0 270 < th dose independent sin 9 NA
639 42.77 wind 9.0 10 < th dose independent rect. 12 18
659 42.82 wind 9.0 270 < th dose independent rect. 5 18
660 42.82 radiation 30.0 90 < th dose dependent rect. 1 5
665 42.84 wind 9.0 90 < th dose independent rect. 1 5
666 42.84 temperature 10.0 90 > th dose independent rect. 1 5
668 42.84 temperature 30.0 90 < th dose independent rect. 1 5
669 42.84 humidity 50.0 90 > th dose independent rect. 1 5
672 42.84 atmosphere 995.0 90 > th dose independent rect. 1 5
673 42.84 atmosphere 1010.0 90 < th dose independent rect. 1 5
691 42.86 radiation 20.0 270 < th dose independent rect. 7 1
695 42.88 radiation 40.0 10 < th dose dependent rect. 7 5
696 42.88 radiation 40.0 270 < th dose dependent rect. 13 11
701 42.90 temperature 10.0 10 > th dose independent rect. 6 6
704 42.90 atmosphere 1015.0 10 < th dose independent rect. 6 6
707 42.90 temperature 10.0 270 > th dose dependent rect. 23 6
714 42.91 precipitation 0.1 10 < th dose independent rect. 6 6
717 42.91 humidity 50.0 270 > th dose independent rect. 5 18
718 42.91 precipitation 0.1 10 < th dose dependent rect. 6 6
743 42.98 precipitation 0.1 90 < th dose independent rect. 1 5
745 42.98 precipitation 0.1 90 < th dose dependent rect. 1 5
755 43.00 temperature 10.0 90 > th dose dependent rect. 12 18
758 43.01 atmosphere 1010.0 10 < th dose independent rect. 12 18
771 43.04 wind 9.0 270 < th dose dependent rect. 6 3
775 43.06 wind 1.0 10 > th dose independent rect. 6 6
779 43.07 temperature 20.0 90 > th dose independent rect. 3 3
781 43.07 wind 9.0 10 < th dose independent rect. 6 6
785 43.07 atmosphere 995.0 270 > th dose independent rect. 9 21
786 43.07 temperature 10.0 270 > th dose dependent rect. 5 5
788 43.08 radiation 1.0 270 > th dose independent sin 9 NA
799 43.10 radiation 1.0 270 > th dose independent rect. 6 3
809 43.12 atmosphere 1015.0 10 < th dose dependent rect. 1 6
811 43.13 atmosphere 1000.0 270 > th dose independent rect. 7 1
819 43.14 temperature 10.0 10 > th dose dependent rect. 12 18
823 43.15 precipitation 0.1 10 < th dose independent rect. 12 18
827 43.15 precipitation 0.1 10 < th dose dependent rect. 12 18
901 43.25 radiation 1.0 10 > th dose independent rect. 6 6
902 43.25 humidity 50.0 270 > th dose independent rect. 14 10
903 43.25 wind 1.0 270 > th dose independent rect. 4 21
910 43.26 humidity 80.0 10 > th dose independent rect. 1 6
933 43.29 temperature 30.0 90 < th dose independent rect. 6 19
936 43.29 wind 9.0 270 < th dose dependent rect. 23 6
961 43.32 wind 9.0 270 < th dose independent rect. 4 21