Os07g0142000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reticulon family protein.
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Os07g0142000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reticulon family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.1 | 0.235 | 13.6 | 0.43 | 0.147 | -0.555 | -0.161 | -0.69 | 0.304 | 20.2 | 11.36 | 177 | -- | -- |
| 25.79 | 0.237 | 13.6 | 0.455 | 0.112 | -0.593 | -0.467 | -- | 0.325 | 16.6 | 0.9511 | 169 | -- | -- |
| 25.1 | 0.233 | 13.6 | 0.429 | 0.151 | -0.54 | -- | -0.699 | 0.302 | 21.4 | 14.69 | 169 | -- | -- |
| 25.94 | 0.237 | 13.6 | 0.422 | 0.162 | -0.487 | -- | -- | 0.3 | 21.6 | 13.47 | 177 | -- | -- |
| 26.15 | 0.238 | 13.6 | 0.427 | -- | -0.621 | -- | -0.699 | 0.302 | -- | 10.72 | 157 | -- | -- |
| 29.54 | 0.255 | 13.6 | 0.428 | 0.343 | -- | 0.347 | -- | 0.273 | 0.222 | -- | -- | -- | -- |
| 30.05 | 0.257 | 13.6 | 0.415 | 0.342 | -- | -- | -- | 0.272 | 0.0411 | -- | -- | -- | -- |
| 26.97 | 0.242 | 13.6 | 0.421 | -- | -0.566 | -- | -- | 0.3 | -- | 5.503 | 158 | -- | -- |
| 30.48 | 0.257 | 13.6 | -- | 0.176 | -0.502 | -- | -- | 0.25 | 22.4 | 18.86 | 168 | -- | -- |
| 37.41 | 0.286 | 13.6 | 0.425 | -- | -- | -- | -- | 0.277 | -- | -- | -- | -- | -- |
| 34.58 | 0.275 | 13.6 | -- | 0.347 | -- | -- | -- | 0.226 | 0.108 | -- | -- | -- | -- |
| 31.64 | 0.262 | 13.6 | -- | -- | -0.57 | -- | -- | 0.254 | -- | 4.841 | 152 | -- | -- |
| 42.18 | 0.303 | 13.6 | -- | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.60 | radiation | 30 | 270 | < th | dose independent | rect. | 3 | 11 |
| 4 | 24.64 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 9 | 24.66 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 11 |
| 16 | 24.75 | radiation | 30 | 90 | < th | dose independent | rect. | 5 | 21 |
| 17 | 24.75 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 21 |
| 18 | 24.77 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 22 | 24.82 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 34 | 24.90 | radiation | 30 | 270 | < th | dose independent | rect. | 3 | 21 |
| 53 | 25.03 | radiation | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 64 | 25.07 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 70 | 25.10 | radiation | 1 | 270 | > th | dose dependent | sin | 2 | NA |
| 91 | 25.15 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 121 | 25.18 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 128 | 25.20 | radiation | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 129 | 25.21 | radiation | 30 | 270 | < th | dose independent | sin | 5 | NA |
| 258 | 25.33 | radiation | 10 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 260 | 25.34 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 10 |
| 282 | 25.37 | radiation | 30 | 270 | < th | dose independent | rect. | 12 | 23 |
| 319 | 25.39 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 9 |
| 324 | 25.40 | radiation | 30 | 270 | > th | dose independent | sin | 4 | NA |
| 383 | 25.46 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 8 |
| 398 | 25.46 | radiation | 30 | 270 | < th | dose independent | rect. | 19 | 23 |
| 421 | 25.47 | radiation | 10 | 270 | > th | dose dependent | no | NA | NA |
| 560 | 25.49 | radiation | 30 | 10 | < th | dose independent | rect. | 6 | 18 |
| 741 | 25.51 | radiation | 30 | 270 | > th | dose independent | rect. | 15 | 23 |
| 743 | 25.51 | radiation | 30 | 270 | < th | dose independent | rect. | 16 | 23 |
| 820 | 25.56 | radiation | 30 | 270 | > th | dose independent | rect. | 7 | 7 |
| 906 | 25.59 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 12 |
| 918 | 25.59 | radiation | 40 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 945 | 25.63 | radiation | 40 | 10 | > th | dose independent | rect. | 13 | 23 |
| 957 | 25.65 | radiation | 30 | 270 | < th | dose independent | no | NA | NA |