Os05g0526400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reticulon family protein.
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Os05g0526400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reticulon family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.55 | 0.369 | 8.89 | 0.475 | 0.554 | -1.15 | -0.0615 | 0.504 | -0.0599 | 0.754 | 39.07 | 6978 | -- | -- |
| 60 | 0.361 | 8.88 | 0.442 | 0.569 | -1.23 | -0.0577 | -- | -0.114 | 0.83 | 38.89 | 10388 | -- | -- |
| 61.16 | 0.364 | 8.89 | 0.473 | 0.555 | -1.18 | -- | 0.313 | -0.0996 | 0.743 | 49.76 | 8409 | -- | -- |
| 60 | 0.361 | 8.89 | 0.44 | 0.57 | -1.23 | -- | -- | -0.117 | 0.818 | 59.81 | 10471 | -- | -- |
| 78.82 | 0.414 | 8.88 | 0.463 | -- | -1.34 | -- | -0.12 | -0.126 | -- | 68.89 | 9730 | -- | -- |
| 85.31 | 0.433 | 8.8 | 1.18 | 0.608 | -- | -0.0362 | -- | 0.274 | 0.865 | -- | -- | -- | -- |
| 85.32 | 0.433 | 8.8 | 1.18 | 0.608 | -- | -- | -- | 0.274 | 0.855 | -- | -- | -- | -- |
| 78.84 | 0.414 | 8.88 | 0.441 | -- | -1.33 | -- | -- | -0.133 | -- | 85.7 | 9734 | -- | -- |
| 59.26 | 0.359 | 8.91 | -- | 0.563 | -1.3 | -- | -- | -0.219 | 0.783 | 67.15 | 24311 | -- | -- |
| 108.41 | 0.487 | 8.79 | 1.2 | -- | -- | -- | -- | 0.285 | -- | -- | -- | -- | -- |
| 122 | 0.517 | 8.83 | -- | 0.627 | -- | -- | -- | 0.142 | 0.939 | -- | -- | -- | -- |
| 78.68 | 0.413 | 8.9 | -- | -- | -1.36 | -- | -- | -0.227 | -- | 88.61 | 24107 | -- | -- |
| 146.53 | 0.565 | 8.82 | -- | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.33 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 2 | 57.36 | radiation | 20 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 3 | 57.38 | radiation | 20 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 10 | 57.39 | radiation | 20 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 12 | 57.40 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 16 | 57.50 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 17 | 57.52 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 18 | 57.54 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 39 | 57.87 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 15 |
| 54 | 57.98 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 62 | 58.02 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 65 | 58.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 66 | 58.03 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 68 | 58.04 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 9 |
| 77 | 58.08 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 80 | 58.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 90 | 58.12 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 98 | 58.15 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 10 | 10 |
| 108 | 58.19 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 110 | 58.20 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 112 | 58.21 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 139 | 58.31 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 18 | NA |
| 141 | 58.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 144 | 58.31 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 145 | 58.31 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 146 | 58.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 161 | 58.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 174 | 58.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 176 | 58.38 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 179 | 58.39 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 183 | 58.40 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 9 |
| 185 | 58.40 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 12 |
| 189 | 58.41 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 192 | 58.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 193 | 58.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 197 | 58.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 21 |
| 198 | 58.42 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 220 | 58.44 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 222 | 58.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 227 | 58.44 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 247 | 58.48 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 18 | NA |
| 274 | 58.50 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 17 |
| 289 | 58.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 12 |
| 335 | 58.54 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 429 | 58.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 21 |
| 441 | 58.65 | radiation | 1 | 14400 | < th | dose independent | sin | 8 | NA |
| 448 | 58.66 | radiation | 1 | 14400 | > th | dose independent | sin | 8 | NA |
| 453 | 58.67 | humidity | 90 | 14400 | > th | dose dependent | sin | 11 | NA |
| 461 | 58.68 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 462 | 58.68 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 472 | 58.70 | humidity | 90 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 474 | 58.70 | radiation | 1 | 14400 | < th | dose dependent | sin | 8 | NA |
| 476 | 58.70 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 498 | 58.72 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 500 | 58.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 18 |
| 559 | 58.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 576 | 58.79 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 600 | 58.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 15 |
| 623 | 58.83 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 745 | 58.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 746 | 58.94 | radiation | 40 | 4320 | < th | dose dependent | rect. | 2 | 6 |
| 760 | 58.95 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 769 | 58.96 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 9 | NA |
| 770 | 58.96 | radiation | 40 | 4320 | < th | dose dependent | rect. | 4 | 4 |
| 789 | 58.97 | radiation | 40 | 4320 | < th | dose dependent | rect. | 22 | 10 |
| 802 | 58.99 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 858 | 59.03 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 886 | 59.05 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 908 | 59.06 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 922 | 59.07 | radiation | 30 | 4320 | > th | dose dependent | rect. | 15 | 18 |
| 938 | 59.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |