Os03g0781700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reticulon family protein.
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Os03g0781700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reticulon family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.72 | 0.427 | 11.9 | -0.633 | 1.05 | -3.45 | -0.676 | 2.66 | 0.18 | 11.6 | 0.54 | 806 | -- | -- |
| 91.72 | 0.446 | 11.8 | -0.532 | 1.07 | -3.45 | -0.359 | -- | 0.217 | 11.6 | 0.4558 | 808 | -- | -- |
| 84.42 | 0.428 | 11.9 | -0.674 | 1.12 | -3.73 | -- | 2.38 | 0.17 | 10.8 | 0.48 | 801 | -- | -- |
| 91.97 | 0.447 | 11.8 | -0.574 | 1.16 | -3.86 | -- | -- | 0.191 | 10.5 | 0.438 | 804 | -- | -- |
| 92.03 | 0.447 | 11.8 | -0.513 | -- | -2.77 | -- | 2.55 | 0.233 | -- | 1.35 | 617 | -- | -- |
| 110.8 | 0.493 | 11.9 | -0.204 | 2.47 | -- | -1.87 | -- | 0.353 | 16.7 | -- | -- | -- | -- |
| 119.95 | 0.513 | 11.9 | -0.213 | 2.46 | -- | -- | -- | 0.344 | 16.7 | -- | -- | -- | -- |
| 103.73 | 0.474 | 11.9 | -0.419 | -- | -2.74 | -- | -- | 0.218 | -- | 1.14 | 614 | -- | -- |
| 100.33 | 0.467 | 11.8 | -- | 1.02 | -3.43 | -- | -- | 0.282 | 11.3 | 0.5399 | 796 | -- | -- |
| 441.01 | 0.981 | 11.8 | -0.307 | -- | -- | -- | -- | 0.28 | -- | -- | -- | -- | -- |
| 121.15 | 0.515 | 11.9 | -- | 2.46 | -- | -- | -- | 0.368 | 16.7 | -- | -- | -- | -- |
| 107.93 | 0.484 | 11.9 | -- | -- | -2.71 | -- | -- | 0.261 | -- | 1.606 | 606 | -- | -- |
| 443.49 | 0.983 | 11.8 | -- | -- | -- | -- | -- | 0.314 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.21 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 2 | 77.32 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 8 | 78.30 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 5 |
| 9 | 78.71 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 12 | 78.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 13 | 78.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 34 | 80.67 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 5 |
| 39 | 80.82 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 11 |
| 55 | 81.57 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 64 | 81.97 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 74 | 82.22 | radiation | 1 | 270 | > th | dose independent | rect. | 11 | 19 |
| 81 | 82.40 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 83 | 82.54 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 108 | 83.18 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 18 |
| 117 | 83.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 118 | 83.38 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 21 |
| 128 | 83.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 16 |
| 131 | 83.54 | radiation | 1 | 90 | < th | dose dependent | sin | 15 | NA |
| 132 | 83.56 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 137 | 83.64 | radiation | 1 | 270 | < th | dose dependent | sin | 19 | NA |
| 142 | 83.67 | radiation | 1 | 270 | > th | dose independent | sin | 18 | NA |
| 146 | 83.74 | radiation | 1 | 270 | > th | dose independent | rect. | 10 | 22 |
| 152 | 83.82 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 155 | 83.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 167 | 84.08 | radiation | 1 | 270 | > th | dose independent | rect. | 11 | 8 |
| 197 | 84.21 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 204 | 84.35 | temperature | 20 | 30 | > th | dose dependent | rect. | 14 | 18 |
| 205 | 84.36 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 210 | 84.45 | radiation | 1 | 270 | < th | dose independent | sin | 19 | NA |
| 237 | 84.70 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 19 |
| 249 | 84.76 | temperature | 20 | 90 | > th | dose dependent | rect. | 14 | 16 |
| 268 | 84.96 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 308 | 85.39 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 323 | 85.45 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 328 | 85.52 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 371 | 85.85 | radiation | 1 | 90 | > th | dose independent | sin | 14 | NA |
| 375 | 85.88 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 7 |
| 380 | 85.92 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 20 |
| 386 | 86.02 | temperature | 25 | 90 | > th | dose independent | rect. | 14 | 5 |
| 392 | 86.08 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 21 |
| 397 | 86.13 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 19 |
| 411 | 86.26 | humidity | 80 | 720 | > th | dose independent | rect. | 24 | 22 |
| 412 | 86.27 | radiation | 1 | 90 | < th | dose independent | sin | 15 | NA |
| 436 | 86.45 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 451 | 86.53 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 474 | 86.65 | temperature | 25 | 10 | > th | dose independent | rect. | 14 | 6 |
| 476 | 86.66 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 18 |
| 488 | 86.71 | temperature | 25 | 720 | > th | dose dependent | sin | 18 | NA |
| 506 | 86.79 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 511 | 86.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 555 | 86.97 | temperature | 20 | 90 | > th | dose dependent | sin | 15 | NA |
| 572 | 87.04 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 23 |
| 590 | 87.14 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 635 | 87.31 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 19 |
| 654 | 87.37 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 3 |
| 674 | 87.46 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 680 | 87.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 714 | 87.54 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 730 | 87.55 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 763 | 87.62 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 12 |
| 793 | 87.67 | temperature | 20 | 90 | > th | dose dependent | rect. | 14 | 5 |
| 825 | 87.78 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 844 | 87.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 845 | 87.86 | humidity | 70 | 720 | > th | dose dependent | sin | 16 | NA |
| 848 | 87.87 | humidity | 90 | 90 | < th | dose independent | rect. | 13 | 6 |
| 865 | 87.92 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 896 | 87.99 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 917 | 88.02 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 937 | 88.10 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 14 |
| 950 | 88.13 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 14 |
| 956 | 88.14 | humidity | 90 | 720 | < th | dose dependent | sin | 13 | NA |