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Os04g0367400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reticulon family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.64 (0.0178) R2 : 0.691
β1 : -1.35 (0.0651) R2dD : 0.303 R2D : -0.00943
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.05 (0.038) R2dN8 : 0.7 R2N8 : 0.388
σ : 0.334
deviance : 51.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.78 0.265 8.63 -1.59 0.504 -0.0194 0.504 1.37 -1.11 1.81 91.33 4480 -- --
34.34 0.273 8.64 -1.37 0.506 0.0899 0.519 -- -1.05 1.76 86.5 9650 -- --
32.75 0.267 8.63 -1.6 0.506 -0.011 -- 1.35 -1.11 1.88 91.2 4524 -- --
35.05 0.276 8.64 -1.29 0.512 0.132 -- -- -1.01 1.89 91.13 47520 -- --
45.35 0.315 8.62 -1.41 -- 0.303 -- 0.773 -1.01 -- 90.84 4552 -- --
34.51 0.275 8.65 -1.36 0.505 -- 0.516 -- -1.06 1.84 -- -- -- --
35.54 0.279 8.65 -1.37 0.506 -- -- -- -1.07 1.89 -- -- -- --
46.08 0.318 8.63 -1.41 -- 0.354 -- -- -0.992 -- 89.54 8979 -- --
49.47 0.328 8.57 -- 0.474 0.99 -- -- -0.724 1.75 95 47520 -- --
51.03 0.334 8.64 -1.35 -- -- -- -- -1.05 -- -- -- -- --
85.14 0.432 8.61 -- 0.481 -- -- -- -0.913 1.81 -- -- -- --
65.09 0.376 8.57 -- -- 0.977 -- -- -0.714 -- 95 47520 -- --
99.17 0.465 8.61 -- -- -- -- -- -0.904 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.51 wind 9.0 4320 > th dose independent rect. 11 1
2 30.62 wind 1.0 14400 < th dose independent rect. 2 2
3 30.63 wind 9.0 4320 < th dose independent rect. 11 1
4 30.68 temperature 20.0 14400 < th dose dependent rect. 20 1
5 30.69 temperature 20.0 14400 < th dose independent rect. 10 11
7 30.72 wind 1.0 14400 > th dose independent rect. 2 2
8 30.72 temperature 20.0 14400 < th dose independent rect. 12 8
11 30.73 radiation 1.0 4320 < th dose independent rect. 18 19
14 30.74 wind 9.0 4320 > th dose dependent rect. 11 1
18 30.77 radiation 1.0 4320 < th dose independent rect. 18 11
24 30.79 radiation 1.0 4320 < th dose independent rect. 18 17
25 30.79 radiation 1.0 4320 > th dose independent rect. 18 19
32 30.85 temperature 20.0 14400 > th dose independent rect. 17 2
33 30.86 temperature 20.0 14400 > th dose independent rect. 15 4
42 30.87 radiation 1.0 4320 > th dose independent rect. 18 17
44 30.88 wind 3.0 1440 < th dose independent rect. 1 2
49 30.89 temperature 20.0 14400 > th dose independent rect. 11 9
59 30.93 wind 3.0 1440 > th dose independent rect. 1 2
60 30.93 temperature 20.0 14400 > th dose independent rect. 7 14
82 30.97 radiation 1.0 4320 < th dose dependent rect. 18 19
84 30.98 radiation 1.0 4320 < th dose independent rect. 18 8
88 30.99 temperature 20.0 14400 < th dose independent sin 21 NA
89 30.99 radiation 1.0 4320 < th dose independent rect. 18 1
90 30.99 radiation 1.0 4320 < th dose independent rect. 18 4
100 31.00 radiation 1.0 4320 < th dose independent rect. 6 7
104 31.01 radiation 1.0 4320 > th dose independent rect. 6 7
119 31.04 atmosphere 1005.0 30 > th dose dependent rect. 3 8
123 31.06 temperature 20.0 14400 > th dose independent sin 22 NA
126 31.06 radiation 1.0 4320 < th dose dependent rect. 18 17
134 31.07 radiation 1.0 4320 < th dose dependent rect. 6 7
209 31.11 radiation 1.0 4320 < th dose dependent rect. 20 17
229 31.12 radiation 1.0 4320 < th dose dependent rect. 23 14
235 31.13 precipitation 0.1 14400 > th dose independent rect. 5 6
247 31.13 radiation 1.0 4320 < th dose dependent rect. 1 12
265 31.14 precipitation 0.1 14400 > th dose dependent rect. 5 6
266 31.14 radiation 1.0 4320 < th dose dependent rect. 4 9
282 31.15 radiation 1.0 4320 > th dose independent rect. 18 11
291 31.16 precipitation 0.1 14400 > th dose independent rect. 4 8
306 31.17 precipitation 0.1 14400 > th dose dependent rect. 4 9
309 31.18 temperature 20.0 14400 > th dose independent rect. 7 1
311 31.18 precipitation 0.1 14400 < th dose independent rect. 4 9
317 31.18 temperature 25.0 14400 < th dose dependent rect. 8 6
321 31.18 precipitation 0.1 14400 < th dose dependent rect. 4 9
330 31.19 wind 1.0 43200 < th dose dependent rect. 2 2
343 31.20 temperature 25.0 14400 < th dose dependent rect. 8 3
346 31.21 precipitation 0.1 14400 < th dose independent rect. 5 6
348 31.21 precipitation 0.1 14400 < th dose dependent rect. 5 6
349 31.22 temperature 20.0 14400 < th dose independent rect. 7 1
353 31.22 wind 1.0 43200 < th dose independent rect. 17 13
354 31.22 temperature 25.0 14400 < th dose dependent rect. 9 1
356 31.22 radiation 1.0 4320 < th dose dependent rect. 7 2
384 31.24 radiation 1.0 4320 < th dose independent sin 5 NA
389 31.24 radiation 1.0 4320 < th dose dependent sin 5 NA
402 31.25 radiation 1.0 4320 > th dose independent sin 5 NA
422 31.25 humidity 90.0 4320 > th dose dependent rect. 2 15
459 31.26 wind 5.0 1440 < th dose dependent rect. 1 2
475 31.27 wind 1.0 1440 > th dose dependent rect. 1 2
517 31.29 radiation 1.0 4320 > th dose independent rect. 18 1
570 31.31 wind 9.0 4320 > th dose dependent rect. 5 7
578 31.32 precipitation 0.1 14400 > th dose independent rect. 6 2
588 31.32 humidity 90.0 4320 > th dose dependent sin 3 NA
591 31.32 precipitation 0.1 14400 > th dose dependent rect. 6 2
597 31.32 humidity 90.0 14400 > th dose dependent rect. 19 11
608 31.33 wind 9.0 4320 > th dose independent rect. 5 7
619 31.33 humidity 90.0 4320 > th dose dependent rect. 6 9
623 31.33 radiation 1.0 1440 < th dose dependent rect. 18 11
644 31.34 temperature 20.0 14400 < th dose dependent sin 20 NA
734 31.38 wind 1.0 43200 > th dose independent rect. 17 13
749 31.38 humidity 90.0 14400 > th dose dependent rect. 3 6
760 31.39 wind 9.0 4320 > th dose independent rect. 15 1
797 31.40 humidity 80.0 4320 > th dose independent rect. 10 1
807 31.40 humidity 90.0 14400 > th dose dependent sin 10 NA
812 31.40 wind 1.0 14400 < th dose dependent rect. 2 4
817 31.40 radiation 1.0 1440 < th dose dependent rect. 18 8
830 31.41 humidity 80.0 4320 < th dose independent rect. 17 6
908 31.42 radiation 1.0 1440 < th dose dependent rect. 18 4
915 31.42 precipitation 0.1 14400 > th dose dependent rect. 4 11
933 31.43 radiation 1.0 1440 < th dose dependent rect. 18 1
936 31.43 humidity 90.0 4320 > th dose dependent rect. 6 6