BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0367400 Os04g0367400|AK061121
(213 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0367400 Reticulon family protein 356 8e-99
Os01g0851300 Reticulon family protein 119 1e-27
Os03g0336600 Reticulon family protein 92 3e-19
Os05g0550100 89 2e-18
Os01g0736900 Reticulon family protein 83 1e-16
Os05g0526400 Reticulon family protein 81 4e-16
Os02g0265900 Reticulon family protein 81 5e-16
Os01g0139000 Reticulon family protein 79 2e-15
Os06g0503400 Reticulon family protein 78 6e-15
Os05g0312500 Reticulon family protein 74 1e-13
Os01g0226300 Reticulon family protein 71 7e-13
Os04g0670000 Reticulon family protein 68 5e-12
>Os04g0367400 Reticulon family protein
Length = 213
Score = 356 bits (913), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 177/213 (83%), Positives = 177/213 (83%)
Query: 1 MDRRDDSCCPXXXXXVSSLIGEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYXXXXX 60
MDRRDDSCCP VSSLIGEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGY
Sbjct: 1 MDRRDDSCCPGGGGGVSSLIGEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYTFLSL 60
Query: 61 XXXXXXXXXXXXXXWAKAARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDI 120
WAKAARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDI
Sbjct: 61 ASNVLLLLLTVLFLWAKAARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDI 120
Query: 121 ALGKDSVLFYQVFXXXXXXXXXXXXTDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFA 180
ALGKDSVLFYQVF TDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFA
Sbjct: 121 ALGKDSVLFYQVFLSLWIISIIGSLTDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFA 180
Query: 181 YLNLQMYEMVYERFSAKCFHRARDLVIEVLKEP 213
YLNLQMYEMVYERFSAKCFHRARDLVIEVLKEP
Sbjct: 181 YLNLQMYEMVYERFSAKCFHRARDLVIEVLKEP 213
>Os01g0851300 Reticulon family protein
Length = 203
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 99/200 (49%), Gaps = 3/200 (1%)
Query: 1 MDRRDDSC--CPXXXXXVSSLIGEFVGDVVMWRRGDVSACLLAATVSGWLLFGS-GGYXX 57
MD D C L G + DVV+WRR +V+ LAA + W+LF GY
Sbjct: 1 MDASDQGCRLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTL 60
Query: 58 XXXXXXXXXXXXXXXXXWAKAARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVF 117
WAKAARLLNRP PP+P ++IS+ +++ AA + + ++ F
Sbjct: 61 LSFVSSVLMIVLVVLFVWAKAARLLNRPPPPVPLIKISEDSMSKAAAAVGNILHKALQGF 120
Query: 118 HDIALGKDSVLFYQVFXXXXXXXXXXXXTDFTTLCYTSIVAVLTIPALYQKYEECIDRYM 177
+IA GKDS LFY++ TD TL Y +V LTIPAL KYEE I +++
Sbjct: 121 ENIAHGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFL 180
Query: 178 RFAYLNLQMYEMVYERFSAK 197
A N+Q ++ + +K
Sbjct: 181 NQASANIQACGQAWKAYKSK 200
>Os03g0336600 Reticulon family protein
Length = 231
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 1/178 (0%)
Query: 21 GEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYXXXXXXXXXXXXXXXXXXXWAKAAR 80
G D+++W+RG V+ ++ W LF G K A
Sbjct: 43 GGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQFIRIKVAG 102
Query: 81 LLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDIALGKDSVLFYQVFXXXXXXX 140
LLN+ P+PE+ +S+++V+ AA +N + + HDI LGKD LF+QV
Sbjct: 103 LLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHDITLGKDFRLFFQVVLLLWLLS 162
Query: 141 XXXXXTDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFAYLNL-QMYEMVYERFSAK 197
TL Y +A++TIPALY K +E +DRY + N+ + Y++V E ++
Sbjct: 163 VIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGMVHRNISRHYKIVDENVMSR 220
>Os05g0550100
Length = 788
Score = 89.4 bits (220), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 72/156 (46%)
Query: 19 LIGEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYXXXXXXXXXXXXXXXXXXXWAKA 78
L G V D+++WR ++SA +LA W LF Y W+ A
Sbjct: 30 LGGRKVADIMLWRDRNLSAGILAGATLIWFLFDVAEYNLVTLLCHIALLGMLVLFIWSNA 89
Query: 79 ARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDIALGKDSVLFYQVFXXXXX 138
A L +R P IPE+ +S+ E+A LHS + +V +DI+ GK+ F V
Sbjct: 90 APLFDRAPPRIPEVIVSEHAFRELALTLHSKVAHFSAVLYDISCGKELRKFLAVIGSLWI 149
Query: 139 XXXXXXXTDFTTLCYTSIVAVLTIPALYQKYEECID 174
FTTL Y + LT+PALY++YE +D
Sbjct: 150 LAVIGETCSFTTLLYVGFLCALTLPALYERYETEVD 185
>Os01g0736900 Reticulon family protein
Length = 253
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 3/185 (1%)
Query: 17 SSLIGEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYXXXXXXXXXXXXXXXXXXXWA 76
S L G D+V+WR +S +LA + WLLF Y W+
Sbjct: 61 SVLGGGKPADLVLWRNKKISGGVLAGATAIWLLFEIMEYHLLTLVCHCLILSLAVLFLWS 120
Query: 77 KAARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDIALGKDSVLFYQVFXXX 136
A+ +++ P IPE++I + + +A L +N F+ +I G+D F V
Sbjct: 121 NASTFIHKSPPNIPEVKIPEDLTVNIALSLRYEINRGFATLREIGHGRDLKKFLIVIAGL 180
Query: 137 XXXXXXXXXTDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFAYLNLQMYEMVYERFSA 196
+F TL Y VA+ T+P LY+KYE+ +D + A + + Y Y F
Sbjct: 181 WILSVLGSSCNFLTLFYIVFVALYTVPVLYEKYEDKVDAFGEKAEIEFKKY---YALFEE 237
Query: 197 KCFHR 201
KC +
Sbjct: 238 KCLSK 242
>Os05g0526400 Reticulon family protein
Length = 251
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 3/185 (1%)
Query: 17 SSLIGEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYXXXXXXXXXXXXXXXXXXXWA 76
S L G D+ +WR +S +LA + WLLF Y W+
Sbjct: 59 SVLGGGKPADLFLWRNKKISVGVLAGATAIWLLFEVMDYHLLTLLCHCIILTLAMLFLWS 118
Query: 77 KAARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDIALGKDSVLFYQVFXXX 136
A+ +N+ P IPE++I + + VA L +N F+ +I G D F V
Sbjct: 119 NASTFINKSPPNIPEVKIPEDLAVNVARSLRFEINRGFATLREIGQGHDLKKFLIVVVGL 178
Query: 137 XXXXXXXXXTDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFAYLNLQMYEMVYERFSA 196
+F TL Y + + T+P LY+KYE+ ID + A + L+ Y Y F
Sbjct: 179 WVLSVLGSCCNFLTLFYIVFMVLYTVPVLYEKYEDQIDAFGEKAMIELKKY---YAIFDE 235
Query: 197 KCFHR 201
KC +
Sbjct: 236 KCLSK 240
>Os02g0265900 Reticulon family protein
Length = 230
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%)
Query: 17 SSLIGEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYXXXXXXXXXXXXXXXXXXXWA 76
+L G DV++W+ +SA ++ W+LF Y W+
Sbjct: 37 QALGGGKAADVLLWKDKKISAAVIGGATVLWVLFEVVDYHFLTLISHVLIGVLAILFLWS 96
Query: 77 KAARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDIALGKDSVLFYQVFXXX 136
KA + + P IPE++IS+ + VA L + +N + +I+LG D + F V
Sbjct: 97 KATIFIKKSPPNIPEVKISEDLAVNVALALRTDINQALHLLREISLGHDLMKFLGVIVAL 156
Query: 137 XXXXXXXXXTDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFAYLNL 184
DF TL Y +++ + T+P LY KY++ +D + A++ L
Sbjct: 157 WILSEIGSLCDFLTLFYVAVLMLHTVPILYHKYQDKVDHFAGKAHVEL 204
>Os01g0139000 Reticulon family protein
Length = 213
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 71/170 (41%)
Query: 18 SLIGEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYXXXXXXXXXXXXXXXXXXXWAK 77
+L G D+++WR VSA ++A W LF Y WA
Sbjct: 23 ALGGHKAADIILWRERRVSASIVAGATVAWYLFEVAEYHFLSLACYLAMLGMLVVFIWAN 82
Query: 78 AARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDIALGKDSVLFYQVFXXXX 137
A+ N P P IPE+ +S++ +V LHS + +DIA GKD +F
Sbjct: 83 ASAFFNLPAPRIPEIFVSERTTRQVILALHSRLTWFVHRLYDIACGKDIKMFILTVFSLF 142
Query: 138 XXXXXXXXTDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFAYLNLQMY 187
TL Y ++ +T+P +Y+ YE +D + A +L+ +
Sbjct: 143 IASVIASCFSSLTLLYLVVLGTMTLPVMYENYESEVDHLVSTAVHDLRSH 192
>Os06g0503400 Reticulon family protein
Length = 265
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 3/185 (1%)
Query: 17 SSLIGEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYXXXXXXXXXXXXXXXXXXXWA 76
+L G DV++W+ SA ++ W+LF Y W+
Sbjct: 73 KALGGGKTADVLLWKDKKTSAVVIGGATVIWILFEVLDYHLLTLLSHVMIGALAILFLWS 132
Query: 77 KAARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDIALGKDSVLFYQVFXXX 136
KA + + P IP ++I + V V+ L S +N +F +IALG D F V
Sbjct: 133 KATTFIKKSPPDIPVVQIPEDVAVNVSRALRSDINRALHLFREIALGHDLKKFLGVIVAL 192
Query: 137 XXXXXXXXXTDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFAYLNLQMYEMVYERFSA 196
DF TL Y +++ + T+P LY KY++ +D + A+ + YE A
Sbjct: 193 WVLSEVGSCCDFLTLIYVAVLMLHTVPILYDKYQDKVDHFAGRAHSEACKH---YEVLDA 249
Query: 197 KCFHR 201
K +
Sbjct: 250 KVLSK 254
>Os05g0312500 Reticulon family protein
Length = 251
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 67/167 (40%)
Query: 19 LIGEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYXXXXXXXXXXXXXXXXXXXWAKA 78
L G D+V+WR S +LA WLLF GY WA A
Sbjct: 62 LGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLMVFLTVCFVWANA 121
Query: 79 ARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDIALGKDSVLFYQVFXXXXX 138
A +NR P P+ +S+ ++A +L +N F +A GKD +
Sbjct: 122 ASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDLKTYLMTVAGLWF 181
Query: 139 XXXXXXXTDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFAYLNLQ 185
F TL YT + T+P LY+KYE+ +D A + L+
Sbjct: 182 VSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELK 228
>Os01g0226300 Reticulon family protein
Length = 178
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%)
Query: 34 DVSACLLAATVSGWLLFGSGGYXXXXXXXXXXXXXXXXXXXWAKAARLLNRPEPPIPEMR 93
++SA +L + W+LF GY W+ A+ +N+ P IPE+
Sbjct: 3 NISAGVLGGATAIWILFELLGYHLLTFVCHGLIFSLGLLFLWSNASSFINKSPPRIPEVI 62
Query: 94 ISQQVVNEVAALLHSGMNTVFSVFHDIALGKDSVLFYQVFXXXXXXXXXXXXTDFTTLCY 153
I + +V +A +N F+ IALG+D F V +F TL Y
Sbjct: 63 IPEDLVVNIALSTRYEINRAFANLRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLTLVY 122
Query: 154 TSIVAVLTIPALYQKYEECIDRYMRFAYLNLQ 185
V + T+P LY+KYE+ ID Y ++ ++
Sbjct: 123 IVFVVLHTVPILYEKYEDQIDSYGEKGWVEIK 154
>Os04g0670000 Reticulon family protein
Length = 199
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 81/161 (50%)
Query: 21 GEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYXXXXXXXXXXXXXXXXXXXWAKAAR 80
G V D+V+WRR +VSA +A + W LF GY WAK+A
Sbjct: 15 GGAVADLVLWRRRNVSAAAVAGATAVWFLFERAGYSFPSVMANALLLLVAILFFWAKSAS 74
Query: 81 LLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDIALGKDSVLFYQVFXXXXXXX 140
LLNRP PP+P++ +S VV + A +N V +V HDIA+ +D +F +V
Sbjct: 75 LLNRPLPPLPKLEVSDVVVEKAADRALVWINKVLAVGHDIAIKRDRSVFIKVILILWVVS 134
Query: 141 XXXXXTDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFAY 181
+F TL Y ++ L +P LY+KY++ +D + A+
Sbjct: 135 YIGMLFNFLTLIYIGVMFSLLVPPLYEKYQDQVDEKIGMAH 175
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.140 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,706,077
Number of extensions: 177701
Number of successful extensions: 586
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 12
Length of query: 213
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 116
Effective length of database: 11,971,043
Effective search space: 1388640988
Effective search space used: 1388640988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)