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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0139000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reticulon family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.58 (0.0548) R2 : 0.736
β1 : -7.5 (0.23) R2dD : 0.918 R2D : 0.637
β2 : 0.937 (0.136) R2dC : 0.0272 R2C : 0.0151
β3 : 1.86 (0.241) R2dE : 0.0603 R2E : -0.177
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.856 (0.132) R2dN8 : 0.046 R2N8 : -0.0701
σ : 0.978
deviance : 441.29
__
_____
C
peak time of C : 5.27
E
wheather : temperature
threshold : 12.89
memory length : 8373
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
428.48 0.973 6.73 -8.87 0.899 1.96 0.258 -7.74 -0.851 5.63 25.92 1288 -- --
441.56 0.979 6.57 -7.44 0.914 1.83 0.462 -- -0.784 5.13 12.9 6997 -- --
428.58 0.964 6.73 -8.87 0.905 1.99 -- -7.86 -0.845 5.72 26 1278 -- --
441.29 0.978 6.58 -7.5 0.937 1.86 -- -- -0.856 5.27 12.89 8373 -- --
469.05 1.01 6.75 -8.67 -- 2.03 -- -6.61 -0.947 -- 24.73 1289 -- --
500.41 1.05 6.47 -6.51 0.985 -- 0.551 -- -0.319 4.9 -- -- -- --
501.16 1.05 6.47 -6.51 0.99 -- -- -- -0.322 4.99 -- -- -- --
482.08 1.02 6.55 -6.96 -- 1.41 -- -- -0.595 -- 22.64 1283 -- --
978.34 1.46 6.02 -- 0.743 -4.09 -- -- 1.62 6.47 12.52 47520 -- --
552.69 1.1 6.48 -6.48 -- -- -- -- -0.297 -- -- -- -- --
1619.45 1.88 6.31 -- 0.876 -- -- -- 0.404 5.24 -- -- -- --
1018.61 1.49 6.04 -- -- -4.03 -- -- 1.65 -- 12.6 47520 -- --
1659.59 1.9 6.32 -- -- -- -- -- 0.422 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 416.18 precipitation 0.1 43200 > th dose independent rect. 2 3
2 416.23 precipitation 0.1 43200 < th dose independent rect. 2 3
3 416.23 precipitation 0.1 43200 < th dose dependent rect. 2 3
4 417.11 wind 5.0 43200 > th dose independent sin 13 NA
5 417.69 wind 3.0 43200 > th dose dependent rect. 19 5
6 417.82 wind 5.0 43200 < th dose independent sin 13 NA
7 418.08 wind 5.0 43200 > th dose independent rect. 18 7
10 418.26 wind 5.0 43200 < th dose independent rect. 18 7
13 418.43 precipitation 0.1 43200 > th dose dependent rect. 2 3
14 418.60 wind 5.0 43200 > th dose dependent rect. 14 20
16 418.70 wind 5.0 43200 > th dose independent rect. 13 22
17 418.73 temperature 25.0 43200 > th dose dependent rect. 9 2
18 418.81 precipitation 0.1 43200 > th dose independent rect. 23 7
27 418.97 wind 5.0 43200 > th dose independent rect. 17 10
30 419.05 temperature 25.0 43200 > th dose dependent rect. 24 12
34 419.08 wind 5.0 43200 > th dose independent rect. 16 14
35 419.09 precipitation 0.1 43200 < th dose independent rect. 1 5
36 419.09 precipitation 0.1 43200 < th dose dependent rect. 1 5
46 419.21 temperature 30.0 43200 < th dose independent rect. 12 1
48 419.23 precipitation 0.1 43200 < th dose independent rect. 23 7
51 419.23 precipitation 0.1 43200 < th dose dependent rect. 23 7
56 419.28 precipitation 0.1 43200 > th dose independent rect. 1 5
59 419.28 precipitation 0.1 43200 > th dose dependent rect. 23 7
62 419.31 wind 5.0 43200 > th dose independent rect. 16 23
63 419.35 precipitation 0.1 43200 > th dose dependent rect. 1 5
65 419.38 wind 5.0 43200 < th dose independent rect. 16 23
69 419.41 wind 5.0 43200 < th dose independent rect. 13 22
71 419.43 wind 5.0 43200 > th dose independent rect. 15 18
74 419.44 temperature 30.0 43200 > th dose independent rect. 12 1
76 419.44 wind 5.0 43200 > th dose dependent sin 13 NA
81 419.48 wind 5.0 43200 > th dose independent rect. 10 23
82 419.48 temperature 25.0 43200 > th dose dependent sin 6 NA
95 419.54 wind 5.0 43200 > th dose independent rect. 6 23
104 419.59 wind 5.0 43200 > th dose independent rect. 4 23
106 419.60 wind 5.0 43200 > th dose independent no NA NA
116 419.63 wind 5.0 43200 < th dose independent rect. 17 10
118 419.64 wind 5.0 43200 > th dose independent rect. 1 23
121 419.67 temperature 25.0 43200 > th dose independent rect. 2 8
130 419.72 precipitation 0.1 43200 > th dose dependent rect. 1 13
134 419.74 temperature 25.0 43200 > th dose independent rect. 8 1
146 419.80 precipitation 0.1 43200 > th dose dependent rect. 22 9
166 419.89 wind 5.0 43200 > th dose independent rect. 21 23
170 419.92 wind 5.0 43200 < th dose independent rect. 6 23
179 419.99 wind 5.0 43200 < th dose independent no NA NA
181 419.99 wind 5.0 43200 < th dose independent rect. 10 23
182 420.00 temperature 25.0 43200 > th dose independent rect. 5 5
186 420.02 wind 5.0 43200 < th dose independent rect. 4 23
191 420.04 temperature 25.0 43200 < th dose independent rect. 2 8
194 420.06 precipitation 0.1 43200 > th dose dependent rect. 23 15
199 420.08 wind 5.0 43200 < th dose independent rect. 1 23
215 420.12 precipitation 0.1 43200 > th dose dependent rect. 22 13
220 420.14 precipitation 0.1 43200 < th dose independent rect. 2 13
223 420.14 precipitation 0.1 43200 < th dose dependent rect. 2 13
254 420.26 precipitation 0.1 43200 > th dose independent rect. 2 13
263 420.26 wind 5.0 43200 > th dose dependent rect. 2 22
270 420.30 temperature 25.0 43200 < th dose independent rect. 5 5
272 420.30 wind 5.0 43200 > th dose dependent rect. 6 22
278 420.32 temperature 25.0 43200 < th dose independent rect. 8 1
283 420.33 precipitation 0.1 43200 > th dose independent rect. 23 15
291 420.35 precipitation 0.1 43200 > th dose independent rect. 22 9
305 420.40 precipitation 0.1 43200 < th dose independent rect. 23 15
306 420.40 precipitation 0.1 43200 < th dose dependent rect. 23 15
314 420.42 wind 5.0 43200 > th dose dependent rect. 4 23
318 420.43 wind 5.0 43200 > th dose dependent no NA NA
322 420.44 wind 5.0 43200 > th dose dependent rect. 20 23
330 420.47 wind 5.0 43200 < th dose independent rect. 15 18
341 420.51 wind 5.0 43200 < th dose independent rect. 16 14
380 420.61 wind 5.0 43200 > th dose dependent rect. 17 23
387 420.63 wind 9.0 43200 > th dose independent rect. 14 19
396 420.65 precipitation 0.1 43200 < th dose independent rect. 22 9
397 420.65 humidity 90.0 43200 > th dose dependent rect. 18 1
398 420.65 precipitation 0.1 43200 < th dose dependent rect. 22 9
423 420.71 wind 9.0 43200 < th dose independent rect. 14 19
427 420.71 temperature 25.0 43200 > th dose dependent rect. 13 23
435 420.73 temperature 25.0 43200 > th dose dependent rect. 15 23
440 420.74 wind 9.0 43200 > th dose dependent rect. 14 18
446 420.75 precipitation 0.1 43200 < th dose independent rect. 22 13
449 420.75 temperature 25.0 43200 > th dose dependent no NA NA
450 420.75 precipitation 0.1 43200 < th dose dependent rect. 22 13
453 420.75 temperature 25.0 43200 > th dose dependent rect. 6 22
458 420.76 precipitation 0.1 43200 > th dose independent rect. 22 13
477 420.78 temperature 25.0 43200 > th dose dependent rect. 2 23
561 420.89 wind 5.0 43200 > th dose dependent rect. 23 23
571 420.91 temperature 25.0 43200 > th dose independent sin 7 NA
618 420.98 precipitation 0.1 43200 > th dose dependent sin 5 NA
734 421.25 wind 9.0 43200 < th dose dependent rect. 20 3
744 421.27 precipitation 0.1 43200 < th dose independent sin 6 NA
748 421.27 precipitation 0.1 43200 < th dose dependent sin 6 NA
761 421.30 precipitation 0.1 43200 > th dose independent sin 6 NA
764 421.31 temperature 25.0 43200 < th dose independent sin 7 NA
783 421.35 temperature 30.0 43200 < th dose independent rect. 24 15
830 421.42 temperature 25.0 43200 > th dose dependent rect. 13 15
887 421.53 humidity 80.0 43200 < th dose independent rect. 8 5
956 421.64 temperature 30.0 43200 < th dose independent rect. 11 14