BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0562300 Os06g0562300|Os06g0562300
(545 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0562300 POX domain containing protein 641 0.0
Os02g0226600 POX domain containing protein 245 8e-65
Os03g0680800 Similar to Prep (Fragment) 137 2e-32
Os12g0636200 Similar to Prep (Fragment) 137 2e-32
Os03g0165300 Similar to Prep (Fragment) 135 1e-31
Os06g0108900 POX domain containing protein 133 4e-31
Os11g0158600 POX domain containing protein 132 8e-31
Os03g0124000 POX domain containing protein 129 6e-30
Os12g0160500 Similar to BEL1-related homeotic protein 5 127 2e-29
Os10g0534900 Similar to Prep (Fragment) 127 3e-29
Os05g0455200 Similar to Homeodomain protein JUBEL2 122 7e-28
Os01g0848400 Acid phosphatase/vanadium-dependent haloperoxi... 121 1e-27
Os03g0680700 Similar to Knotted1-interacting protein 120 3e-27
AK064665 118 1e-26
Os03g0732100 Similar to Homeodomain protein JUBEL1 81 2e-15
>Os06g0562300 POX domain containing protein
Length = 545
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/545 (63%), Positives = 348/545 (63%)
Query: 1 MSTSSNPSYHQLGLDAISCCXXXXXXXXXXXXXXXXXXXXXXXXXXLVASPVAAVGDELA 60
MSTSSNPSYHQLGLDAISCC LVASPVAAVGDELA
Sbjct: 1 MSTSSNPSYHQLGLDAISCCFVAGGGGAEAAAPFFGFGFGDVDGEFLVASPVAAVGDELA 60
Query: 61 CAVPLRRPQXXXXXXXXXXXXXXXXXXXXXXXCSTVHSVLGSVEFGCGTSSGVTIAQASR 120
CAVPLRRPQ CSTVHSVLGSVEFGCGTSSGVTIAQASR
Sbjct: 61 CAVPLRRPQGSVSEEEVNAAAVAAAAAGGAESCSTVHSVLGSVEFGCGTSSGVTIAQASR 120
Query: 121 MGRLXXXXXXXXXXXXXXXXXXXXIAPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
MGRL IAPLH
Sbjct: 121 MGRLAGEAPCGDAGGGGWIYGGSGIAPLHGAYYLSGFSSGAGAGFLSPFAASSVAAAAPA 180
Query: 181 XXELSLRLGATKCXXXXXXXXXXXXXXXXGLTHVSSXXXXXXXXXXXXXXXXXLFHPTHG 240
ELSLRLGATKC GLTHVSS LFHPTHG
Sbjct: 181 ASELSLRLGATKCSSPSSMANASSEVSCSGLTHVSSGGGLGYHQAAAAGAGAALFHPTHG 240
Query: 241 DDXXXXXXGELRQAYHSRAPPHFSQVVSRSAVLAHVAQELLNGFVACLLQXXXXXXXXXX 300
DD GELRQAYHSRAPPHFSQVVSRSAVLAHVAQELLNGFVACLLQ
Sbjct: 241 DDAAAAAAGELRQAYHSRAPPHFSQVVSRSAVLAHVAQELLNGFVACLLQDVAADAASGV 300
Query: 301 XXXXXXQALSSGFSARITTAPTEDASPGSGGARWAAEAQRLRKLLQLVDEKCNQCVEEMQ 360
QALSSGFSARITTAPTEDASPGSGGARWAAEAQRLRKLLQLVDEKCNQCVEEMQ
Sbjct: 301 DGGEASQALSSGFSARITTAPTEDASPGSGGARWAAEAQRLRKLLQLVDEKCNQCVEEMQ 360
Query: 361 STAARFNSMVRSTXXXXXXLTXXXXXXXXXXXXXXXXXXXMGQLVXXXXXXXXXXXXXXX 420
STAARFNSMVRST LT MGQLV
Sbjct: 361 STAARFNSMVRSTGGGGGGLTAAFAGRAVAAAYRRVRRRVMGQLVAAATARSSSSAAAAA 420
Query: 421 LEEKERSWESSFIQKHWAMQQLRRGDQQSWRPQRGLPEKSVAVLKAWMFENFLRPYPKDS 480
LEEKERSWESSFIQKHWAMQQLRRGDQQSWRPQRGLPEKSVAVLKAWMFENFLRPYPKDS
Sbjct: 421 LEEKERSWESSFIQKHWAMQQLRRGDQQSWRPQRGLPEKSVAVLKAWMFENFLRPYPKDS 480
Query: 481 EKDMLAARSGLSRSQVSNWFINARVRLWKPMIEDMYEELKKTSGGSDGAAEIEHLSSKDV 540
EKDMLAARSGLSRSQVSNWFINARVRLWKPMIEDMYEELKKTSGGSDGAAEIEHLSSKDV
Sbjct: 481 EKDMLAARSGLSRSQVSNWFINARVRLWKPMIEDMYEELKKTSGGSDGAAEIEHLSSKDV 540
Query: 541 LSLES 545
LSLES
Sbjct: 541 LSLES 545
>Os02g0226600 POX domain containing protein
Length = 539
Score = 245 bits (625), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 144/307 (46%), Positives = 179/307 (58%), Gaps = 30/307 (9%)
Query: 262 HFSQVVSRSAVLAHVAQELLNGFVACLL-----------QXXXXXXXXXXXXXXXXQALS 310
+F+ VV+RS A VAQ++LN V C+L A S
Sbjct: 237 NFAVVVARSRYAA-VAQQVLNDAVGCVLGGVADAAADSASGVDSGSSRPSSCSVAGGAPS 295
Query: 311 SGFSARITTAPTEDASPGSGGARWAAEAQRLRK----LLQLVDEKCNQCVEEMQSTAARF 366
S S+ + GG A AQRLR +LQL+D+K NQC++E+QST ARF
Sbjct: 296 SAVSSNNQLIASSGEHTHGGGD---ASAQRLRSELLTMLQLMDQKYNQCLDEIQSTTARF 352
Query: 367 NSMV----RSTXXXXXXLTXXXXXXXXXXXXXXXXXXXMGQLVXXXXXXX-----XXXXX 417
N++ R+ + G+++
Sbjct: 353 NTLTHATARAAGMSSSSICAPFAHRAVSAMYHGLRRRIAGEIMSAAAAAGRPCRGGESSS 412
Query: 418 XXXLEEKERSWESSFIQKHWAMQQLRRGDQQSWRPQRGLPEKSVAVLKAWMFENFLRPYP 477
E+ERSWES+FIQKHWA+QQLRRG+QQ WRPQRGLPEKSVAVLKAWMFENFLRPYP
Sbjct: 413 AVTGGERERSWESAFIQKHWAVQQLRRGEQQCWRPQRGLPEKSVAVLKAWMFENFLRPYP 472
Query: 478 KDSEKDMLAARSGLSRSQVSNWFINARVRLWKPMIEDMYEELKKTSGGSDG--AAEIEHL 535
KDSEK+MLAARSGLSR+QVSNWFINARVRLWKPMIE+M EELK++SGG G A +EH+
Sbjct: 473 KDSEKEMLAARSGLSRNQVSNWFINARVRLWKPMIEEMCEELKRSSGGGAGNQALAMEHM 532
Query: 536 SSKDVLS 542
+S+DV+S
Sbjct: 533 NSQDVVS 539
>Os03g0680800 Similar to Prep (Fragment)
Length = 675
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 81/107 (75%), Gaps = 7/107 (6%)
Query: 433 IQKHWAMQQLRRGDQQSWRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSGLS 492
+++ A QQ Q +WRPQRGLPE SV++L+AW+FE+FL PYPKDSEK MLA ++GL+
Sbjct: 365 LRQQRAFQQYGLLQQNAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSEKLMLARQTGLT 424
Query: 493 RSQVSNWFINARVRLWKPMIEDMYEELKKTSGGSDGAAEIEHLSSKD 539
RSQ+SNWFINARVRLWKPMIEDMY+E G A+++ SS D
Sbjct: 425 RSQISNWFINARVRLWKPMIEDMYKE-------EIGEADLDSNSSSD 464
>Os12g0636200 Similar to Prep (Fragment)
Length = 647
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 72/86 (83%)
Query: 433 IQKHWAMQQLRRGDQQSWRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSGLS 492
+++ A QQ Q +WRPQRGLPE SV +L+AW+FE+FL PYPKDSEK MLA ++GL+
Sbjct: 371 LRQQRAFQQYGMIPQNAWRPQRGLPENSVTILRAWLFEHFLHPYPKDSEKLMLARQTGLT 430
Query: 493 RSQVSNWFINARVRLWKPMIEDMYEE 518
RSQ+SNWFINARVRLWKPMIEDMY+E
Sbjct: 431 RSQISNWFINARVRLWKPMIEDMYKE 456
>Os03g0165300 Similar to Prep (Fragment)
Length = 600
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 75/88 (85%), Gaps = 2/88 (2%)
Query: 433 IQKHWAMQQ--LRRGDQQSWRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSG 490
+++ AMQQ + + Q +WRPQRGLPE +V+VL+AW+FE+FL PYPKDSEK MLA ++G
Sbjct: 314 LRQQRAMQQFGMMQQPQHAWRPQRGLPESAVSVLRAWLFEHFLHPYPKDSEKLMLARQTG 373
Query: 491 LSRSQVSNWFINARVRLWKPMIEDMYEE 518
LSR QVSNWFINARVRLWKPMIE+MY+E
Sbjct: 374 LSRGQVSNWFINARVRLWKPMIEEMYKE 401
>Os06g0108900 POX domain containing protein
Length = 530
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 77/101 (76%), Gaps = 1/101 (0%)
Query: 433 IQKHWAMQQLRRGDQQSWRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSGLS 492
+++ A QQ D WRPQRGLPE++VAVL+AW+FE+FL PYP D +K +LA ++GLS
Sbjct: 278 LRQQRAFQQSGAVDSFPWRPQRGLPERAVAVLRAWLFEHFLHPYPNDVDKHILARQTGLS 337
Query: 493 RSQVSNWFINARVRLWKPMIEDMYEELKKTSGGSDGAAEIE 533
RSQVSNWFINARVRLWKPMIEDMY+E K SDG ++
Sbjct: 338 RSQVSNWFINARVRLWKPMIEDMYKEETKPE-SSDGNNKLN 377
>Os11g0158600 POX domain containing protein
Length = 678
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 67/73 (91%)
Query: 449 SWRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSGLSRSQVSNWFINARVRLW 508
+WRPQRGLPE+SV++L+AW+FE+FL PYPKDS+K MLA ++GL+RSQVSNWFINARVRLW
Sbjct: 362 AWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVRLW 421
Query: 509 KPMIEDMYEELKK 521
KPM+E+MY E K
Sbjct: 422 KPMVEEMYLEETK 434
>Os03g0124000 POX domain containing protein
Length = 591
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 73/89 (82%), Gaps = 1/89 (1%)
Query: 433 IQKHWAMQQLRRGDQQSWRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSGLS 492
I+ H ++Q + D WRPQRGLP+++V +L+AW+FE+FL PYP D +K +LA ++GLS
Sbjct: 308 IRHHKSLQGVAAMDSHPWRPQRGLPDRAVTILRAWLFEHFLHPYPSDVDKHILARQTGLS 367
Query: 493 RSQVSNWFINARVRLWKPMIEDMY-EELK 520
RSQVSNWFINARVRLWKPM+E+MY EE+K
Sbjct: 368 RSQVSNWFINARVRLWKPMVEEMYVEEMK 396
>Os12g0160500 Similar to BEL1-related homeotic protein 5
Length = 417
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 52/67 (77%), Positives = 64/67 (95%)
Query: 450 WRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSGLSRSQVSNWFINARVRLWK 509
WRPQRGLPE++V+VL+AW+FE+FL PYPKDS+K MLA ++GL+RSQVSNWFINARVRLWK
Sbjct: 117 WRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWK 176
Query: 510 PMIEDMY 516
PM+E+MY
Sbjct: 177 PMVEEMY 183
>Os10g0534900 Similar to Prep (Fragment)
Length = 586
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 66/77 (85%)
Query: 450 WRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSGLSRSQVSNWFINARVRLWK 509
WRPQRGLPE++V++L+AW+FE+FL PYP D +K +LA ++GLSRSQV+NWFINARVRLWK
Sbjct: 325 WRPQRGLPERAVSILRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVANWFINARVRLWK 384
Query: 510 PMIEDMYEELKKTSGGS 526
PM+E+MY E K GS
Sbjct: 385 PMVEEMYAEEMKDEEGS 401
>Os05g0455200 Similar to Homeodomain protein JUBEL2
Length = 580
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 63/68 (92%)
Query: 450 WRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSGLSRSQVSNWFINARVRLWK 509
WRPQRGLPE++V+VL+AW+FE+FL PYP DS+K MLA ++GL+R+QVSNWFINARVRLWK
Sbjct: 339 WRPQRGLPERAVSVLRAWLFEHFLHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVRLWK 398
Query: 510 PMIEDMYE 517
PM+E+++
Sbjct: 399 PMVEEIHN 406
>Os01g0848400 Acid phosphatase/vanadium-dependent haloperoxidase family protein
Length = 612
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 69/89 (77%), Gaps = 4/89 (4%)
Query: 450 WRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSGLSRSQVSNWFINARVRLWK 509
WRPQRGLPE++V+VL+AW+FE+FL PYP D +K MLA ++GL+R+QVSNWFINARVRLWK
Sbjct: 371 WRPQRGLPERAVSVLRAWLFEHFLHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVRLWK 430
Query: 510 PMIEDMYE----ELKKTSGGSDGAAEIEH 534
PM+E+++ ++ K S G + H
Sbjct: 431 PMVEEIHNLEMRQMHKHSVVDKGQHSVHH 459
>Os03g0680700 Similar to Knotted1-interacting protein
Length = 346
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 60/69 (86%)
Query: 450 WRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSGLSRSQVSNWFINARVRLWK 509
WRP RGLPE +V VL+AW+F++FL PYP D+EK MLA +GLSR+Q+SNWFINARVRLWK
Sbjct: 260 WRPLRGLPEDAVGVLRAWLFDHFLHPYPNDNEKLMLAVATGLSRTQISNWFINARVRLWK 319
Query: 510 PMIEDMYEE 518
PM+E+MY +
Sbjct: 320 PMVEEMYND 328
>AK064665
Length = 188
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 60/69 (86%)
Query: 450 WRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSGLSRSQVSNWFINARVRLWK 509
WRP RGLPE +V VL+AW+F++FL PYP D+EK MLA +GLSR+Q+SNWFINARVRLWK
Sbjct: 102 WRPLRGLPEDAVGVLRAWLFDHFLHPYPNDNEKLMLAVATGLSRTQISNWFINARVRLWK 161
Query: 510 PMIEDMYEE 518
PM+E+MY +
Sbjct: 162 PMVEEMYND 170
>Os03g0732100 Similar to Homeodomain protein JUBEL1
Length = 631
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 48/56 (85%)
Query: 446 DQQSWRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKDMLAARSGLSRSQVSNWFI 501
+Q++WRPQRGLPE+SV +L++W+FE+FL PYP D++K +LA ++GLSR+Q+ + I
Sbjct: 576 EQEAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQMHIYVI 631
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.128 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,867,272
Number of extensions: 342494
Number of successful extensions: 970
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 963
Number of HSP's successfully gapped: 15
Length of query: 545
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 439
Effective length of database: 11,501,117
Effective search space: 5048990363
Effective search space used: 5048990363
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)