BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0491000 Os05g0491000|AK105230
(155 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0491000 EF-Hand type domain containing protein 289 7e-79
AK062496 128 2e-30
Os05g0491100 Similar to Calmodulin 128 2e-30
Os07g0687200 Calmodulin (CaM) 127 3e-30
Os03g0319300 Calmodulin (CaM) 127 3e-30
Os01g0267900 Similar to Calmodulin NtCaM3 (Calmodulin NtCaM... 127 3e-30
Os01g0279300 Similar to Calmodulin 1 (Fragment) 125 1e-29
Os01g0810300 Similar to Calmodulin-like protein 122 9e-29
Os12g0132300 Similar to Calmodulin (CaM) 105 2e-23
Os12g0603800 Similar to Calmodulin NtCaM13 96 9e-21
Os03g0743500 Similar to Calmodulin 1 (Fragment) 94 4e-20
Os08g0117400 Similar to Calmodulin 1 (Fragment) 85 3e-17
Os11g0586200 84 5e-17
Os11g0134400 Similar to Calmodulin 6 (CaM 6) 83 9e-17
Os07g0618800 Similar to Centrin (Caltractin) 74 6e-14
Os05g0585500 Similar to Calcium-dependent protein kinase 69 2e-12
Os10g0389000 Similar to Centrin [Oryza sativa (japonica cul... 67 4e-12
Os03g0788500 Similar to Calcium-dependent protein kinase 2 66 1e-11
AK058494 64 5e-11
>Os05g0491000 EF-Hand type domain containing protein
Length = 155
Score = 289 bits (739), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 147/155 (94%), Positives = 147/155 (94%)
Query: 1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASX 60
MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATAS
Sbjct: 1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASG 60
Query: 61 XXXXXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGD 120
DIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGD
Sbjct: 61 GGGGGGGDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGD 120
Query: 121 RLTEEEADEMVRKADPAGEGRVEYKEFVKVLMNNK 155
RLTEEEADEMVRKADPAGEGRVEYKEFVKVLMNNK
Sbjct: 121 RLTEEEADEMVRKADPAGEGRVEYKEFVKVLMNNK 155
>AK062496
Length = 149
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 97/153 (63%), Gaps = 5/153 (3%)
Query: 1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASX 60
MA +LT+EQ+ E +E F LFD D DG I EL T +RSLGQN EAE + + + A
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 61 XXXXXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGD 120
IDF FL++ ARKM+ +E+E+ VFD +G I A +LR M + G+
Sbjct: 61 NGT-----IDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGE 115
Query: 121 RLTEEEADEMVRKADPAGEGRVEYKEFVKVLMN 153
+LT+EE DEM+R+AD G+G++ Y+EFVK++M+
Sbjct: 116 KLTDEEVDEMIREADIDGDGQINYEEFVKMMMS 148
>Os05g0491100 Similar to Calmodulin
Length = 149
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 96/152 (63%), Gaps = 5/152 (3%)
Query: 1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASX 60
MA +LT EQ+ E +E F LFD D DG I EL T +RSLGQN EAE + + + A
Sbjct: 1 MADQLTDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 61 XXXXXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGD 120
IDF FL++ A+KM+ +E+EL VFD ++G I A +LR M + G+
Sbjct: 61 NGT-----IDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE 115
Query: 121 RLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152
+LT+EE DEM+R+AD G+G++ Y+EFVKV+M
Sbjct: 116 KLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147
>Os07g0687200 Calmodulin (CaM)
Length = 149
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 96/152 (63%), Gaps = 5/152 (3%)
Query: 1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASX 60
MA +LT +Q+ E +E F LFD D DG I EL T +RSLGQN EAE + + + A
Sbjct: 1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 61 XXXXXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGD 120
IDF FL++ ARKM+ +E+EL VFD ++G I A +LR M + G+
Sbjct: 61 NGT-----IDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE 115
Query: 121 RLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152
+LT+EE DEM+R+AD G+G++ Y+EFVKV+M
Sbjct: 116 KLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147
>Os03g0319300 Calmodulin (CaM)
Length = 149
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 96/152 (63%), Gaps = 5/152 (3%)
Query: 1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASX 60
MA +LT +Q+ E +E F LFD D DG I EL T +RSLGQN EAE + + + A
Sbjct: 1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 61 XXXXXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGD 120
IDF FL++ ARKM+ +E+EL VFD ++G I A +LR M + G+
Sbjct: 61 NGT-----IDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE 115
Query: 121 RLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152
+LT+EE DEM+R+AD G+G++ Y+EFVKV+M
Sbjct: 116 KLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147
>Os01g0267900 Similar to Calmodulin NtCaM3 (Calmodulin NtCaM4) (Calmodulin
NtCaM5) (Calmodulin NtCaM6) (Calmodulin NtCaM7)
(Calmodulin NtCaM8) (Calmodulin NtCaM11) (Calmodulin
NtCaM12)
Length = 149
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 96/152 (63%), Gaps = 5/152 (3%)
Query: 1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASX 60
MA +LT +Q+ E +E F LFD D DG I EL T +RSLGQN EAE + + + A
Sbjct: 1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 61 XXXXXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGD 120
IDF FL++ ARKM+ +E+EL VFD ++G I A +LR M + G+
Sbjct: 61 NGT-----IDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE 115
Query: 121 RLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152
+LT+EE DEM+R+AD G+G++ Y+EFVKV+M
Sbjct: 116 KLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147
>Os01g0279300 Similar to Calmodulin 1 (Fragment)
Length = 149
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 95/152 (62%), Gaps = 5/152 (3%)
Query: 1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASX 60
MA +LT +Q+ E +E F LFD D DG I EL T +RSLGQN EAE + + + A
Sbjct: 1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 61 XXXXXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGD 120
IDF FL++ ARKM+ +E+EL VFD ++G I A +LR M + G+
Sbjct: 61 NGT-----IDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE 115
Query: 121 RLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152
+LT+EE +EM+R+AD G+G++ Y EFVKV+M
Sbjct: 116 KLTDEEVEEMIREADVDGDGQINYDEFVKVMM 147
>Os01g0810300 Similar to Calmodulin-like protein
Length = 187
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 95/155 (61%), Gaps = 5/155 (3%)
Query: 1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASX 60
MA +L++EQ+ E RE F LFD D DG I EL T +RSLGQN EAE + +++
Sbjct: 1 MADQLSEEQIGEFREAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMISEVDTDS 60
Query: 61 XXXXXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGD 120
+I+F FL + ARK+R +E+EL VFD ++G I A +LR M + G+
Sbjct: 61 NG-----NIEFKEFLGLMARKLRDKDSEEELKEAFRVFDKDQNGFISATELRHVMANIGE 115
Query: 121 RLTEEEADEMVRKADPAGEGRVEYKEFVKVLMNNK 155
RLT+EE EM+ +AD G+G++ Y+EFVK +M K
Sbjct: 116 RLTDEEVGEMISEADVDGDGQINYEEFVKCMMAKK 150
>Os12g0132300 Similar to Calmodulin (CaM)
Length = 183
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 90/153 (58%), Gaps = 13/153 (8%)
Query: 4 KLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFL----ADATAS 59
LT+EQ+ E RE F+LFD D DG I + EL T + SLGQ+ EAE ++ + AD + S
Sbjct: 3 HLTKEQIAEFREAFNLFDKDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGS 62
Query: 60 XXXXXXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHG 119
I+F FL + ARK+R E ++ VFD ++G I ++LR M +
Sbjct: 63 ---------IEFEEFLGLLARKLRDTGAEDDIRDAFRVFDKDQNGFITPDELRHVMANLS 113
Query: 120 DRLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152
D L+++E +M+ +AD G+G++ Y EF+KV+M
Sbjct: 114 DPLSDDELADMLHEADSDGDGQINYNEFLKVMM 146
>Os12g0603800 Similar to Calmodulin NtCaM13
Length = 166
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 17/162 (10%)
Query: 3 AKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASXXX 62
++ QEQV E RE F FD D DG I EL T +RSLGQ E + D
Sbjct: 6 VRVRQEQVAEFRETFAFFDKDGDGCITLEELDTVVRSLGQTPTREELAEMIRDVDVDGNG 65
Query: 63 XXXXXDIDFAAFLSVAARKMRRGATE------------KELAACLDVFDDARSGVIPAEQ 110
I+FA FL++ ARK RG +EL VFD + G+I A +
Sbjct: 66 T-----IEFAEFLALMARKASRGGENGGGGDDSGDAADEELREAFKVFDKDQDGLISAAE 120
Query: 111 LRQAMVSHGDRLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152
LR M+S G++LT+EE ++M+R+AD G+G+V + EFV+++M
Sbjct: 121 LRHVMISLGEKLTDEEVEQMIREADLDGDGQVNFDEFVRMMM 162
>Os03g0743500 Similar to Calmodulin 1 (Fragment)
Length = 154
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 5 LTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASXXXXX 64
LT EQ+ +E F LFD + DG I EL RSLG + E + +
Sbjct: 4 LTSEQMVAFQEAFLLFDKNGDGCITLEELAAVTRSLGLEPTDQELNDMMREVDTDGNGI- 62
Query: 65 XXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGDRLTE 124
IDF FLS+ ARKM+ G ++EL +V D ++G I +LR M + G+++T+
Sbjct: 63 ----IDFQEFLSLIARKMKDGDGDEELKEAFEVLDKDQNGFISPTELRTVMTNLGEKMTD 118
Query: 125 EEADEMVRKADPAGEGRVEYKEFVKVLMNN 154
EE ++M+R+AD G+G+V Y EFV ++M N
Sbjct: 119 EEVEQMIREADTDGDGQVNYDEFV-IMMKN 147
>Os08g0117400 Similar to Calmodulin 1 (Fragment)
Length = 148
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 4 KLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASXXXX 63
+L++EQV RE F LFD+D DGRIA EL +RSLG N +A+ R A +
Sbjct: 5 ELSEEQVASMREAFSLFDTDGDGRIAPSELGVLMRSLGGNPTQAQLRDIAAQEKLTAP-- 62
Query: 64 XXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGDRLT 123
DF FL + +R ++ L V D SG + LR + S G++L
Sbjct: 63 -----FDFPRFLDLMRAHLRPEPFDRPLRDAFRVLDKDASGTVSVADLRHVLTSIGEKLE 117
Query: 124 EEEADEMVRKADPAGEGRVEYKEFVK 149
E DE +R+ D A +G + Y +F++
Sbjct: 118 PHEFDEWIREVDVAPDGTIRYDDFIR 143
>Os11g0586200
Length = 170
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASX 60
M + L ++Q+ + R+ F LFD + DG I+ EL T L LG A ++ L D +
Sbjct: 1 MESHLNEQQISDFRDAFSLFDKNNDGCISREELATVLTRLGM----APSQEDLQDMIVAV 56
Query: 61 XXXXXXXDIDFAAFLSVAARKMR---RGATEKELAACLDVFDDARSGVIPAEQLRQAMVS 117
I+F FL++ +K+ +G E+EL +FD +G I +L M S
Sbjct: 57 DEDGNGT-IEFDEFLAIMKKKLYENDKGDDEEELRKAFRIFDKDDNGFISRNELSMVMAS 115
Query: 118 HGDRLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152
G+ +TE+E D+M++ AD +G+V+Y+EF +V+M
Sbjct: 116 LGEEMTEDEIDDMMKAADSNNDGQVDYEEFKRVMM 150
>Os11g0134400 Similar to Calmodulin 6 (CaM 6)
Length = 205
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 75/131 (57%), Gaps = 13/131 (9%)
Query: 26 GRIAAGELVTALRSLGQNVDEAEARRFL----ADATASXXXXXXXXDIDFAAFLSVAARK 81
G I + EL T + SLGQ+ EAE ++ + AD + S I+F FL + ARK
Sbjct: 31 GTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGS---------IEFEEFLGLLARK 81
Query: 82 MRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGDRLTEEEADEMVRKADPAGEGR 141
+R E ++ VFD ++G I ++LR M + GD L+++E +M+ +AD G+G+
Sbjct: 82 LRDTGAEDDIREAFRVFDKDQNGFITPDELRHVMANLGDPLSDDELADMLHEADSDGDGQ 141
Query: 142 VEYKEFVKVLM 152
+ Y EF+KV+M
Sbjct: 142 INYNEFLKVMM 152
>Os07g0618800 Similar to Centrin (Caltractin)
Length = 169
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 5 LTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASXXXXX 64
LT+++ E +E FDLFD+D G I A EL A+R+LG + E + + +AD
Sbjct: 21 LTKQKRQEIKEAFDLFDTDNSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGS- 79
Query: 65 XXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGDRLTE 124
ID+ F + K+ +++EL + D ++G I +++ G+ T
Sbjct: 80 ----IDYEEFEHMMTAKIGERDSKEELTKAFSIIDQDKNGKISDVDIQRIAKELGENFTY 135
Query: 125 EEADEMVRKADPAGEGRVEYKEFVKVL 151
+E EMV++AD G+G +++ EF++++
Sbjct: 136 QEIQEMVQEADRNGDGEIDFDEFIRMM 162
>Os05g0585500 Similar to Calcium-dependent protein kinase
Length = 542
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASX 60
+A L++E++ +E+F D+D G I EL L LG + E+E R+ + A
Sbjct: 384 VAENLSEEEIVGLKEMFKSLDTDNSGTITLEELRAGLPKLGTKISESELRQLMEAADVD- 442
Query: 61 XXXXXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGD 120
ID+ F+S A M R E + + FD SG I ++L +A+ + D
Sbjct: 443 ----GNGSIDYVEFIS-ATMHMNRLEKEDHIYKAFEYFDKDHSGFITVDELEEALTKY-D 496
Query: 121 RLTEEEADEMVRKADPAGEGRVEYKEFVKVLMNN 154
E E++ + D +GR+ Y+EFV ++ NN
Sbjct: 497 MGDEATIKEIIAEVDTDHDGRINYQEFVAMMKNN 530
>Os10g0389000 Similar to Centrin [Oryza sativa (japonica cultivar-group)]
Length = 236
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 5/148 (3%)
Query: 4 KLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASXXXX 63
+LT ++ E +E FDLFD+D G I EL A+R+LG + + + +A+
Sbjct: 39 RLTAQKRKEIKEAFDLFDTDGSGTIDPKELNVAMRALGFEMTPEQIHQMIAEVDKDGSGT 98
Query: 64 XXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGDRLT 123
IDF F+ + KM +EL + D +G I +++ + G+ T
Sbjct: 99 -----IDFDEFVHMMTDKMGERDAREELNKAFKIIDKDNNGKISDVDIQRLAIETGEPFT 153
Query: 124 EEEADEMVRKADPAGEGRVEYKEFVKVL 151
+E EM+ AD G+G V+++EF+K++
Sbjct: 154 LDEVREMIEAADENGDGEVDHEEFLKMM 181
>Os03g0788500 Similar to Calcium-dependent protein kinase 2
Length = 599
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 8/151 (5%)
Query: 1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASX 60
+A L+++++ +E+F + D+D G+I EL L+ +G N+ E+E + A
Sbjct: 427 IAENLSEDEIAGLKEMFKMIDTDNSGQITFEELKVGLKKVGANLQESEIYALMQAADVDN 486
Query: 61 XXXXXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGD 120
ID+ F++ A M + E L A FD SG I A++L+ A G
Sbjct: 487 SGT-----IDYGEFIA-ATLHMNKIEREDHLFAAFQYFDKDGSGYITADELQLACEEFG- 539
Query: 121 RLTEEEADEMVRKADPAGEGRVEYKEFVKVL 151
L + + +EM+R+ D +GR++Y EFV ++
Sbjct: 540 -LGDVQLEEMIREVDEDNDGRIDYNEFVAMM 569
>AK058494
Length = 281
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 81/151 (53%), Gaps = 6/151 (3%)
Query: 1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASX 60
+A L+ E+V++ +E+F D+D DG ++ EL + + G ++ E+E + + +
Sbjct: 101 IADHLSAEEVEDIKEMFKAMDTDNDGIVSYEELKSGIAKFGSHLAESEVQMLIEAVDTNG 160
Query: 61 XXXXXXXDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGD 120
+D+ FL+V+ ++R A ++ L FD +G I E+LR+A+V G
Sbjct: 161 KDA-----LDYGEFLAVSLH-LQRMANDEHLRRAFLFFDKDGNGYIEPEELREALVDDGA 214
Query: 121 RLTEEEADEMVRKADPAGEGRVEYKEFVKVL 151
+ E ++++++ D +G++ Y EFV ++
Sbjct: 215 GDSMEVVNDILQEVDTDKDGKISYDEFVAMM 245
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,434,553
Number of extensions: 157079
Number of successful extensions: 872
Number of sequences better than 1.0e-10: 35
Number of HSP's gapped: 836
Number of HSP's successfully gapped: 35
Length of query: 155
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 63
Effective length of database: 12,232,113
Effective search space: 770623119
Effective search space used: 770623119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)