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Os10g0389000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Centrin [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0253) R2 : 0.706
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.05 (0.0621) R2dC : 0.708 R2C : 0.703
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0918 (0.0532) R2dN8 : 0.00248 R2N8 : -0.00254
σ : 0.477
deviance : 104.02
__
_____
C
peak time of C : 21.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.78 0.443 11.9 0.246 1.55 0.786 -0.504 0.913 0.123 20.5 28.23 9 -- --
89.99 0.442 11.9 0.234 1.44 0.82 0.202 -- 0.116 20.3 19.16 5 -- --
88.96 0.439 11.9 0.244 1.48 0.798 -- 0.558 0.129 20.3 20 7 -- --
90.1 0.442 11.9 0.215 1.43 0.851 -- -- 0.116 20.2 19.02 5 -- --
160.78 0.591 11.9 0.163 -- 1.4 -- 0.302 0.125 -- 9.3 4 -- --
102.28 0.474 11.9 0.215 2.05 -- 0.434 -- 0.114 21.6 -- -- -- --
102.99 0.475 11.9 0.199 2.05 -- -- -- 0.114 21.6 -- -- -- --
160.34 0.59 11.9 0.151 -- 1.4 -- -- 0.122 -- 9.3 3 -- --
91.36 0.445 11.9 -- 1.44 0.84 -- -- 0.0929 20.2 19.02 5 -- --
351.84 0.876 11.9 0.215 -- -- -- -- 0.109 -- -- -- -- --
104.02 0.477 11.9 -- 2.05 -- -- -- 0.0918 21.6 -- -- -- --
159.92 0.589 11.9 -- -- 1.41 -- -- 0.108 -- 9.467 2 -- --
353.05 0.877 11.9 -- -- -- -- -- 0.0856 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.56 temperature 10.0 90 > th dose dependent rect. 5 10
2 81.83 humidity 50.0 270 > th dose independent rect. 3 10
3 82.15 radiation 40.0 270 < th dose dependent rect. 23 10
4 82.15 radiation 40.0 10 < th dose dependent rect. 24 22
6 82.19 humidity 50.0 270 > th dose dependent rect. 17 6
8 82.39 humidity 60.0 270 > th dose independent rect. 17 7
12 82.47 temperature 30.0 270 < th dose independent rect. 17 7
13 82.47 radiation 1.0 90 > th dose independent rect. 4 11
24 82.51 humidity 70.0 270 > th dose independent rect. 18 5
31 82.65 humidity 50.0 270 > th dose independent rect. 9 14
33 82.78 temperature 15.0 270 > th dose independent rect. 23 19
34 82.86 temperature 30.0 270 < th dose independent rect. 18 5
37 82.95 humidity 50.0 270 > th dose independent rect. 6 17
41 83.05 radiation 1.0 270 < th dose dependent rect. 17 6
45 83.15 temperature 15.0 90 > th dose independent rect. 23 23
46 83.19 temperature 30.0 270 < th dose independent rect. 23 10
49 83.26 radiation 1.0 270 < th dose independent rect. 17 6
50 83.26 atmosphere 1000.0 270 > th dose independent rect. 24 18
52 83.32 radiation 30.0 270 < th dose independent rect. 23 10
64 83.51 precipitation 0.1 270 < th dose independent rect. 3 10
66 83.51 precipitation 0.1 270 < th dose dependent rect. 3 10
78 83.67 temperature 15.0 270 > th dose independent rect. 23 10
82 83.76 temperature 15.0 270 > th dose independent rect. 24 17
86 83.84 temperature 10.0 270 > th dose independent rect. 3 10
87 83.84 atmosphere 995.0 270 > th dose independent rect. 3 10
88 83.84 atmosphere 1015.0 270 < th dose independent rect. 3 10
89 83.84 temperature 10.0 270 > th dose independent rect. 13 14
91 83.84 temperature 10.0 90 > th dose dependent rect. 15 14
96 83.89 temperature 10.0 10 > th dose dependent rect. 6 10
99 83.94 radiation 30.0 10 < th dose dependent rect. 24 18
105 84.00 atmosphere 1000.0 90 > th dose independent rect. 24 21
107 84.03 radiation 10.0 10 < th dose dependent sin 2 NA
110 84.04 precipitation 0.1 270 < th dose independent rect. 23 19
111 84.04 precipitation 0.1 270 < th dose dependent rect. 23 19
113 84.07 radiation 1.0 10 > th dose independent rect. 6 10
119 84.11 wind 9.0 270 < th dose independent rect. 23 19
123 84.13 wind 5.0 270 < th dose independent rect. 18 5
126 84.14 atmosphere 995.0 270 > th dose independent rect. 18 5
127 84.14 wind 9.0 270 < th dose dependent rect. 18 5
129 84.15 temperature 15.0 90 > th dose independent rect. 15 14
130 84.15 precipitation 0.1 270 < th dose independent rect. 13 14
132 84.15 precipitation 0.1 270 < th dose dependent rect. 13 14
137 84.18 wind 9.0 270 < th dose independent rect. 23 10
139 84.18 humidity 50.0 270 > th dose independent rect. 23 10
140 84.18 atmosphere 995.0 270 > th dose independent rect. 23 10
141 84.18 temperature 10.0 270 > th dose independent rect. 9 14
144 84.25 wind 9.0 270 < th dose independent rect. 18 5
145 84.26 temperature 10.0 270 > th dose independent rect. 18 5
157 84.31 wind 9.0 270 < th dose independent rect. 13 14
165 84.39 atmosphere 1015.0 270 < th dose independent rect. 23 19
168 84.44 precipitation 0.1 270 < th dose independent rect. 18 5
169 84.44 precipitation 0.1 270 < th dose dependent rect. 18 5
183 84.52 humidity 70.0 10 > th dose independent rect. 18 8
185 84.53 humidity 60.0 30 > th dose dependent rect. 18 6
188 84.56 wind 9.0 270 < th dose independent rect. 24 17
206 84.62 atmosphere 1015.0 270 < th dose independent rect. 23 10
213 84.68 wind 9.0 90 < th dose independent rect. 23 23
238 84.74 wind 9.0 270 < th dose independent rect. 17 7
249 84.75 wind 9.0 270 < th dose independent rect. 3 10
255 84.76 humidity 60.0 270 > th dose independent rect. 18 17
256 84.77 humidity 50.0 270 > th dose independent rect. 3 21
257 84.78 precipitation 0.1 270 < th dose independent rect. 23 10
258 84.78 precipitation 0.1 270 < th dose dependent rect. 23 10
280 84.85 humidity 60.0 10 > th dose dependent rect. 18 8
283 84.87 radiation 30.0 90 < th dose independent rect. 15 14
289 84.89 temperature 10.0 10 > th dose dependent rect. 16 14
294 84.90 radiation 40.0 10 < th dose dependent rect. 13 17
296 84.91 humidity 50.0 90 > th dose dependent rect. 22 1
303 84.96 precipitation 0.1 90 < th dose independent rect. 22 1
305 84.96 precipitation 0.1 90 < th dose dependent rect. 22 1
306 84.97 wind 9.0 270 < th dose independent rect. 9 14
316 85.00 radiation 1.0 270 < th dose dependent rect. 8 15
317 85.00 radiation 40.0 90 < th dose dependent rect. 24 17
318 85.01 radiation 1.0 270 < th dose dependent rect. 6 17
328 85.02 humidity 50.0 10 > th dose independent rect. 6 9
340 85.06 temperature 10.0 90 > th dose independent rect. 22 1
341 85.06 temperature 30.0 90 < th dose independent rect. 22 1
342 85.06 humidity 50.0 90 > th dose independent rect. 22 1
345 85.06 atmosphere 995.0 90 > th dose independent rect. 22 1
346 85.06 radiation 1.0 90 < th dose independent rect. 22 1
356 85.06 radiation 1.0 90 < th dose dependent rect. 22 1
362 85.07 wind 9.0 90 < th dose independent rect. 22 1
364 85.08 humidity 50.0 270 > th dose independent rect. 17 20
365 85.08 radiation 40.0 90 < th dose independent rect. 24 21
367 85.09 humidity 70.0 30 > th dose independent rect. 18 6
374 85.12 wind 1.0 270 > th dose independent rect. 18 5
395 85.21 atmosphere 995.0 90 > th dose independent rect. 15 14
411 85.27 wind 9.0 90 < th dose dependent rect. 22 1
413 85.29 wind 9.0 90 < th dose independent rect. 15 14
417 85.30 wind 1.0 270 > th dose independent rect. 13 14
421 85.31 radiation 20.0 10 < th dose independent rect. 24 22
425 85.33 humidity 50.0 90 > th dose independent rect. 21 17
436 85.37 radiation 10.0 270 < th dose dependent rect. 23 16
488 85.55 atmosphere 995.0 270 > th dose dependent rect. 12 6
491 85.56 radiation 1.0 270 < th dose independent rect. 8 16
534 85.74 wind 3.0 270 > th dose independent rect. 12 6
537 85.74 radiation 30.0 10 < th dose dependent rect. 7 23
540 85.77 wind 1.0 90 > th dose independent rect. 5 10
549 85.80 atmosphere 1000.0 10 > th dose independent rect. 2 19
566 85.87 precipitation 0.1 90 < th dose independent rect. 15 14
568 85.87 precipitation 0.1 90 < th dose dependent rect. 15 14
572 85.90 atmosphere 1000.0 270 > th dose independent rect. 12 6
596 85.97 atmosphere 1000.0 270 > th dose independent rect. 13 4
619 86.03 radiation 10.0 30 < th dose dependent rect. 24 14
622 86.04 radiation 30.0 90 < th dose independent rect. 24 18
641 86.07 humidity 50.0 10 > th dose independent rect. 21 17
647 86.10 atmosphere 1015.0 90 < th dose independent rect. 22 1
654 86.11 atmosphere 995.0 90 > th dose dependent rect. 22 1
655 86.12 wind 1.0 43200 < th dose dependent rect. 9 3
672 86.16 radiation 20.0 30 < th dose independent rect. 14 16
675 86.17 atmosphere 1015.0 270 < th dose independent rect. 18 5
710 86.24 precipitation 0.1 90 < th dose independent rect. 23 23
713 86.24 precipitation 0.1 90 < th dose dependent rect. 23 23
718 86.26 temperature 15.0 10 > th dose independent rect. 16 14
744 86.35 radiation 1.0 270 < th dose independent rect. 23 17
764 86.44 atmosphere 995.0 270 > th dose independent rect. 13 15
771 86.45 temperature 10.0 270 > th dose dependent rect. 23 7
780 86.49 radiation 1.0 270 < th dose independent rect. 23 7
782 86.49 temperature 10.0 90 > th dose dependent rect. 22 1
795 86.52 precipitation 0.1 270 < th dose independent rect. 13 5
796 86.52 radiation 40.0 90 < th dose independent rect. 13 8
797 86.52 precipitation 0.1 270 < th dose dependent rect. 13 5
802 86.53 precipitation 0.1 270 < th dose independent rect. 9 14
804 86.53 precipitation 0.1 270 < th dose dependent rect. 9 14
806 86.55 temperature 15.0 270 > th dose independent rect. 23 7
809 86.55 temperature 10.0 90 > th dose dependent rect. 14 7
814 86.57 wind 5.0 90 < th dose independent rect. 21 3
848 86.63 atmosphere 1010.0 270 < th dose independent rect. 23 7
851 86.64 atmosphere 995.0 10 > th dose independent rect. 15 15
858 86.68 humidity 80.0 10 > th dose independent rect. 21 3
889 86.71 humidity 50.0 10 > th dose dependent rect. 24 10
891 86.72 atmosphere 1010.0 90 < th dose independent rect. 15 14
903 86.74 humidity 50.0 90 > th dose dependent rect. 21 3
912 86.76 precipitation 0.1 90 < th dose independent rect. 21 3
915 86.76 precipitation 0.1 90 < th dose dependent rect. 21 3
968 86.87 wind 9.0 270 < th dose independent rect. 23 7
970 86.87 temperature 30.0 270 < th dose independent rect. 23 7
971 86.87 humidity 50.0 270 > th dose independent rect. 23 7
974 86.87 atmosphere 995.0 270 > th dose independent rect. 23 7
978 86.87 temperature 10.0 270 > th dose independent rect. 6 17
989 86.88 atmosphere 995.0 270 > th dose independent rect. 18 19
991 86.88 atmosphere 995.0 270 > th dose dependent rect. 18 5