Os05g0585500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-dependent protein kinase.
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Os05g0585500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-dependent protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.72 | 0.256 | 12 | 1.24 | 0.379 | -0.859 | 0.363 | -2.03 | 0.245 | 14.4 | 0.8098 | 5629 | -- | -- |
| 31.49 | 0.261 | 12 | 0.931 | 0.199 | -0.489 | 0.286 | -- | 0.193 | 14.4 | 3.362 | 13563 | -- | -- |
| 30.13 | 0.256 | 12 | 1.23 | 0.389 | -0.863 | -- | -1.96 | 0.253 | 14.2 | 0.7393 | 5584 | -- | -- |
| 31.21 | 0.26 | 12 | 0.967 | 0.199 | -0.542 | -- | -- | 0.148 | 14.8 | 3.077 | 13581 | -- | -- |
| 30.77 | 0.258 | 12 | 1.18 | -- | -0.795 | -- | -1.61 | 0.237 | -- | 1.276 | 4816 | -- | -- |
| 35.39 | 0.279 | 12 | 1.06 | 0.323 | -- | 0.237 | -- | 0.278 | 15.7 | -- | -- | -- | -- |
| 35.55 | 0.279 | 12 | 1.07 | 0.324 | -- | -- | -- | 0.279 | 15.6 | -- | -- | -- | -- |
| 32.75 | 0.267 | 12 | 0.942 | -- | -0.631 | -- | -- | 0.176 | -- | 2.548 | 4812 | -- | -- |
| 32.9 | 0.267 | 12 | -- | 0.19 | -0.877 | -- | -- | -0.018 | 15.7 | 3.31e-06 | 46649 | -- | -- |
| 41.39 | 0.301 | 12 | 1.05 | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
| 65.56 | 0.379 | 12 | -- | 0.303 | -- | -- | -- | 0.16 | 15.6 | -- | -- | -- | -- |
| 36.76 | 0.282 | 12 | -- | -- | -0.876 | -- | -- | -0.0177 | -- | 0.001461 | 46680 | -- | -- |
| 70.66 | 0.392 | 12 | -- | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.22 | temperature | 20 | 90 | > th | dose dependent | sin | 6 | NA |
| 3 | 28.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 8 | 28.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 36 | 28.79 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 7 |
| 42 | 28.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 13 |
| 49 | 28.92 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 50 | 28.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 17 |
| 55 | 28.94 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 19 |
| 59 | 28.99 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 63 | 29.01 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 14 |
| 71 | 29.04 | temperature | 15 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 79 | 29.05 | temperature | 25 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 84 | 29.06 | temperature | 25 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 89 | 29.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 107 | 29.09 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 21 |
| 109 | 29.10 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 110 | 29.10 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 122 | 29.10 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 124 | 29.11 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 248 | 29.21 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 14 |
| 346 | 29.26 | temperature | 25 | 14400 | < th | dose dependent | sin | 5 | NA |
| 418 | 29.29 | temperature | 15 | 14400 | > th | dose dependent | sin | 7 | NA |
| 505 | 29.32 | temperature | 15 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 570 | 29.34 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 600 | 29.35 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 632 | 29.36 | temperature | 20 | 14400 | < th | dose independent | rect. | 3 | 16 |
| 669 | 29.37 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 703 | 29.38 | wind | 1 | 43200 | > th | dose independent | sin | 12 | NA |
| 705 | 29.38 | radiation | 1 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 706 | 29.38 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 5 |
| 753 | 29.39 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 5 |
| 811 | 29.40 | radiation | 1 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 823 | 29.40 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 12 |
| 824 | 29.40 | temperature | 20 | 14400 | < th | dose independent | rect. | 3 | 12 |
| 840 | 29.40 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 864 | 29.41 | radiation | 1 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 915 | 29.42 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 918 | 29.42 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 9 |
| 995 | 29.43 | temperature | 20 | 14400 | > th | dose independent | sin | 3 | NA |