Os08g0117400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calmodulin 1 (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os08g0117400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Calmodulin 1 (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.77 | 0.229 | 11.7 | 0.478 | 0.405 | 0.43 | 0.24 | -0.189 | 0.0882 | 9.08 | 27.19 | 261 | -- | -- |
| 23.81 | 0.227 | 11.7 | 0.443 | 0.408 | 0.439 | 0.246 | -- | 0.081 | 9.11 | 27.01 | 253 | -- | -- |
| 23.97 | 0.228 | 11.7 | 0.485 | 0.405 | 0.427 | -- | -0.194 | 0.0874 | 9.08 | 27.43 | 253 | -- | -- |
| 24.01 | 0.228 | 11.7 | 0.453 | 0.406 | 0.433 | -- | -- | 0.0797 | 9.04 | 26.99 | 256 | -- | -- |
| 30.94 | 0.259 | 11.7 | 0.545 | -- | 0.642 | -- | -0.215 | 0.126 | -- | 29.7 | 532 | -- | -- |
| 26.58 | 0.242 | 11.8 | 0.333 | 0.452 | -- | 0.212 | -- | -0.016 | 8.24 | -- | -- | -- | -- |
| 26.72 | 0.242 | 11.8 | 0.339 | 0.452 | -- | -- | -- | -0.0163 | 8.18 | -- | -- | -- | -- |
| 30.98 | 0.259 | 11.7 | 0.505 | -- | 0.641 | -- | -- | 0.117 | -- | 29.6 | 533 | -- | -- |
| 28.79 | 0.25 | 11.8 | -- | 0.426 | 0.235 | -- | -- | -0.0114 | 8.47 | 26.06 | 263 | -- | -- |
| 37.99 | 0.288 | 11.8 | 0.342 | -- | -- | -- | -- | -0.011 | -- | -- | -- | -- | -- |
| 29.74 | 0.255 | 11.8 | -- | 0.454 | -- | -- | -- | -0.054 | 8.13 | -- | -- | -- | -- |
| 37.08 | 0.284 | 11.8 | -- | -- | 0.463 | -- | -- | 0.0289 | -- | 29.8 | 509 | -- | -- |
| 41.08 | 0.299 | 11.8 | -- | -- | -- | -- | -- | -0.049 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.30 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 13 | 21.73 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 28 | 22.15 | radiation | 10.0 | 30 | < th | dose dependent | sin | 10 | NA |
| 36 | 22.27 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 43 | 22.38 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 20 | 9 |
| 45 | 22.39 | radiation | 1.0 | 90 | > th | dose independent | sin | 10 | NA |
| 50 | 22.46 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 15 |
| 53 | 22.48 | radiation | 1.0 | 90 | < th | dose independent | sin | 10 | NA |
| 67 | 22.58 | temperature | 20.0 | 90 | > th | dose independent | rect. | 11 | 18 |
| 71 | 22.59 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 18 | 13 |
| 76 | 22.61 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 108 | 22.66 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 123 | 22.68 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 131 | 22.74 | humidity | 90.0 | 30 | < th | dose independent | rect. | 5 | 4 |
| 132 | 22.74 | temperature | 20.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 164 | 22.83 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 200 | 22.98 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 209 | 23.01 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 217 | 23.03 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 9 | 20 |
| 222 | 23.05 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 230 | 23.07 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 21 |
| 233 | 23.07 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 243 | 23.09 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 21 |
| 288 | 23.16 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 294 | 23.16 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 295 | 23.17 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 21 |
| 298 | 23.18 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 300 | 23.19 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 303 | 23.19 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 317 | 23.19 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 318 | 23.19 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 346 | 23.23 | humidity | 90.0 | 30 | < th | dose independent | rect. | 2 | 7 |
| 350 | 23.24 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 368 | 23.26 | wind | 7.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 379 | 23.28 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 384 | 23.29 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 388 | 23.29 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 389 | 23.30 | wind | 3.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 410 | 23.33 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 4 |
| 421 | 23.33 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 429 | 23.34 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 439 | 23.36 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 3 |
| 440 | 23.36 | wind | 5.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 443 | 23.36 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 15 |
| 446 | 23.36 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 450 | 23.37 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 451 | 23.37 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 453 | 23.37 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 454 | 23.37 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 455 | 23.37 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 456 | 23.37 | radiation | 30.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 457 | 23.37 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 13 |
| 461 | 23.37 | temperature | 25.0 | 270 | < th | dose independent | rect. | 16 | 19 |
| 463 | 23.37 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 20 |
| 465 | 23.37 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 470 | 23.37 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 472 | 23.38 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 5 | 2 |
| 488 | 23.39 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 489 | 23.39 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 491 | 23.39 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 492 | 23.39 | humidity | 50.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 494 | 23.39 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 495 | 23.39 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 498 | 23.39 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 517 | 23.40 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 524 | 23.41 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 535 | 23.42 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 538 | 23.42 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 543 | 23.42 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 550 | 23.42 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 561 | 23.43 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 21 |
| 565 | 23.43 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 13 |
| 596 | 23.44 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 3 | 5 |
| 609 | 23.45 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 610 | 23.45 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 643 | 23.46 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 645 | 23.47 | wind | 1.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 646 | 23.47 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 650 | 23.47 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 651 | 23.47 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 652 | 23.47 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 661 | 23.47 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 678 | 23.49 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 683 | 23.49 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 694 | 23.50 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 698 | 23.50 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 18 | 15 |
| 706 | 23.51 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 764 | 23.53 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 787 | 23.55 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 805 | 23.55 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 808 | 23.56 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 815 | 23.56 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 844 | 23.57 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 848 | 23.57 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 865 | 23.57 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 4 |
| 878 | 23.58 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 900 | 23.59 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 928 | 23.60 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 21 |
| 934 | 23.60 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 943 | 23.61 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 951 | 23.61 | wind | 3.0 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 967 | 23.62 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 991 | 23.63 | temperature | 25.0 | 270 | > th | dose independent | rect. | 17 | 21 |