Os07g0687200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calmodulin (CaM).
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Os07g0687200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calmodulin (CaM).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.59 | 0.383 | 13 | 0.565 | 0.833 | 0.444 | 0.424 | -1.76 | 0.371 | 22.5 | 19.7 | 875 | -- | -- |
| 72.1 | 0.395 | 12.9 | 0.73 | 0.878 | 0.787 | 0.178 | -- | 0.411 | 22.4 | 19.3 | 2105 | -- | -- |
| 67.25 | 0.382 | 13 | 0.568 | 0.834 | 0.457 | -- | -1.59 | 0.374 | 22.6 | 19.67 | 888 | -- | -- |
| 69.86 | 0.389 | 12.9 | 0.677 | 0.863 | 1 | -- | -- | 0.416 | 22.5 | 18.5 | 2168 | -- | -- |
| 107.79 | 0.484 | 12.9 | 0.662 | -- | 0.733 | -- | -1.28 | 0.39 | -- | 19.4 | 856 | -- | -- |
| 84.02 | 0.43 | 12.9 | 1.06 | 0.899 | -- | -0.0751 | -- | 0.555 | 22.6 | -- | -- | -- | -- |
| 84.04 | 0.429 | 12.9 | 1.07 | 0.9 | -- | -- | -- | 0.555 | 22.6 | -- | -- | -- | -- |
| 109.96 | 0.488 | 12.9 | 0.671 | -- | 1.25 | -- | -- | 0.355 | -- | 18.8 | 850 | -- | -- |
| 78.87 | 0.414 | 12.9 | -- | 0.907 | 1.41 | -- | -- | 0.246 | 22.5 | 18.3 | 3582 | -- | -- |
| 133.94 | 0.541 | 12.9 | 1.08 | -- | -- | -- | -- | 0.56 | -- | -- | -- | -- | -- |
| 114.01 | 0.499 | 12.9 | -- | 0.908 | -- | -- | -- | 0.436 | 22.7 | -- | -- | -- | -- |
| 119.34 | 0.509 | 12.9 | -- | -- | 1.61 | -- | -- | 0.289 | -- | 18.7 | 840 | -- | -- |
| 164.89 | 0.599 | 12.9 | -- | -- | -- | -- | -- | 0.439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.59 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 20 |
| 7 | 67.17 | radiation | 20 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 13 | 67.32 | radiation | 10 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 22 | 67.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 26 | 67.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 34 | 67.78 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 45 | 67.90 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 21 |
| 67 | 68.03 | temperature | 20 | 1440 | > th | dose independent | sin | 16 | NA |
| 81 | 68.08 | temperature | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 98 | 68.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 22 |
| 107 | 68.20 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 112 | 68.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 139 | 68.29 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 162 | 68.38 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 165 | 68.39 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 23 |
| 166 | 68.40 | radiation | 10 | 90 | < th | dose independent | rect. | 5 | 17 |
| 191 | 68.46 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 23 |
| 201 | 68.48 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 230 | 68.51 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 11 |
| 237 | 68.53 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 268 | 68.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 271 | 68.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 273 | 68.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 324 | 68.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 19 |
| 363 | 68.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 18 |
| 437 | 68.84 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 16 |
| 453 | 68.86 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 459 | 68.86 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 467 | 68.87 | humidity | 90 | 14400 | > th | dose dependent | sin | 0 | NA |
| 479 | 68.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 486 | 68.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 500 | 68.91 | humidity | 70 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 546 | 68.96 | humidity | 90 | 14400 | > th | dose dependent | sin | 18 | NA |
| 553 | 68.97 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 566 | 68.99 | radiation | 20 | 90 | < th | dose dependent | sin | 23 | NA |
| 580 | 69.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 610 | 69.05 | temperature | 20 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 633 | 69.07 | radiation | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 664 | 69.12 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 12 |
| 678 | 69.14 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 714 | 69.19 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 12 |
| 721 | 69.20 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 722 | 69.20 | radiation | 30 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 749 | 69.24 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 765 | 69.25 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 776 | 69.27 | humidity | 90 | 14400 | > th | dose independent | rect. | 11 | 13 |
| 821 | 69.33 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 21 |
| 827 | 69.34 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 18 |
| 852 | 69.36 | humidity | 90 | 14400 | > th | dose independent | rect. | 8 | 20 |
| 870 | 69.38 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 876 | 69.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 883 | 69.39 | temperature | 20 | 1440 | < th | dose dependent | sin | 15 | NA |
| 884 | 69.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 904 | 69.41 | humidity | 90 | 14400 | > th | dose independent | sin | 18 | NA |
| 906 | 69.41 | radiation | 1 | 4320 | < th | dose independent | rect. | 22 | 7 |
| 948 | 69.44 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 991 | 69.49 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 1 |