Os01g0279300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calmodulin 1 (Fragment).
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Os01g0279300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calmodulin 1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.4 | 0.291 | 12.9 | 1.37 | 0.0121 | -0.511 | -0.704 | -0.00994 | 0.508 | 6.49 | 17.36 | 1570 | -- | -- |
| 38.4 | 0.289 | 12.9 | 1.37 | 0.0123 | -0.512 | -0.704 | -- | 0.509 | 6.49 | 17.1 | 1569 | -- | -- |
| 39.63 | 0.293 | 12.9 | 1.37 | 0.0115 | -0.516 | -- | -0.00974 | 0.51 | 3.48 | 16.95 | 1569 | -- | -- |
| 39.63 | 0.293 | 12.9 | 1.36 | 0.0137 | -0.515 | -- | -- | 0.511 | 3.29 | 16.97 | 1569 | -- | -- |
| 39.64 | 0.293 | 12.9 | 1.37 | -- | -0.517 | -- | -0.00847 | 0.513 | -- | 16.62 | 1569 | -- | -- |
| 47.6 | 0.323 | 12.9 | 1.31 | 0.0209 | -- | -0.772 | -- | 0.395 | 5.98 | -- | -- | -- | -- |
| 49.01 | 0.328 | 12.9 | 1.3 | 0.0337 | -- | -- | -- | 0.398 | 1.97 | -- | -- | -- | -- |
| 39.64 | 0.293 | 12.9 | 1.37 | -- | -0.518 | -- | -- | 0.513 | -- | 16.62 | 1569 | -- | -- |
| 64.45 | 0.374 | 13 | -- | 0.0568 | -0.952 | -- | -- | 0.227 | 0.149 | 53.18 | 23986 | -- | -- |
| 49.08 | 0.327 | 12.9 | 1.3 | -- | -- | -- | -- | 0.398 | -- | -- | -- | -- | -- |
| 93.4 | 0.452 | 13 | -- | 0.0585 | -- | -- | -- | 0.253 | 2.52 | -- | -- | -- | -- |
| 64.6 | 0.374 | 13 | -- | -- | -0.957 | -- | -- | 0.23 | -- | 53.23 | 23928 | -- | -- |
| 93.6 | 0.452 | 13 | -- | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.47 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 2 | 36.49 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 3 | 36.49 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 5 |
| 17 | 36.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 19 | 36.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 20 | 36.72 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 14 |
| 30 | 36.77 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 33 | 36.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 10 |
| 34 | 36.81 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 45 | 36.86 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 46 | 36.86 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 10 |
| 54 | 36.89 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 71 | 36.92 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 84 | 36.94 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 101 | 37.02 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 104 | 37.03 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 105 | 37.03 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 106 | 37.03 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 123 | 37.07 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 142 | 37.12 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 148 | 37.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 158 | 37.15 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 160 | 37.16 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 18 | NA |
| 163 | 37.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 14 |
| 188 | 37.20 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 198 | 37.21 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 199 | 37.21 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 201 | 37.21 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 209 | 37.22 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 230 | 37.23 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 277 | 37.28 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 14 |
| 284 | 37.29 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 298 | 37.30 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 338 | 37.33 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 352 | 37.34 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 353 | 37.34 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 364 | 37.35 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 365 | 37.35 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 382 | 37.37 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 402 | 37.39 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 19 | NA |
| 403 | 37.39 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 19 | NA |
| 410 | 37.39 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 19 | NA |
| 419 | 37.40 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 425 | 37.41 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 432 | 37.41 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 530 | 37.51 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 552 | 37.52 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 575 | 37.54 | temperature | 20.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 578 | 37.54 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 659 | 37.59 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 677 | 37.60 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 785 | 37.64 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 788 | 37.65 | temperature | 20.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 800 | 37.65 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 808 | 37.66 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 828 | 37.66 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 878 | 37.68 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 930 | 37.70 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 986 | 37.71 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 7 | 7 |