Os03g0319300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calmodulin (CaM).
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Os03g0319300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calmodulin (CaM).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.2 | 0.399 | 14.2 | 0.554 | 0.529 | 1.3 | 0.426 | 2.05 | 0.478 | 11.1 | 30.18 | 101 | -- | -- |
| 75.49 | 0.405 | 14.2 | 0.899 | 0.268 | 1.41 | -0.0807 | -- | 0.528 | 11.3 | 67.12 | 356 | -- | -- |
| 72.85 | 0.398 | 14.2 | 0.61 | 0.496 | 1.28 | -- | 1.84 | 0.477 | 11.1 | 30.42 | 113 | -- | -- |
| 75.51 | 0.405 | 14.2 | 0.908 | 0.289 | 1.42 | -- | -- | 0.532 | 11.3 | 34.1 | 335 | -- | -- |
| 74.89 | 0.403 | 14.2 | 0.672 | -- | 1.44 | -- | 1.59 | 0.475 | -- | 38.77 | 585 | -- | -- |
| 97.12 | 0.462 | 14.2 | 0.591 | 0.491 | -- | 0.286 | -- | 0.325 | 7.6 | -- | -- | -- | -- |
| 97.34 | 0.462 | 14.2 | 0.598 | 0.491 | -- | -- | -- | 0.325 | 7.67 | -- | -- | -- | -- |
| 76.78 | 0.408 | 14.2 | 0.948 | -- | 1.47 | -- | -- | 0.549 | -- | 54.49 | 584 | -- | -- |
| 94.96 | 0.454 | 14.2 | -- | 0.298 | 0.989 | -- | -- | 0.378 | 9.52 | 35.5 | 357 | -- | -- |
| 110.3 | 0.491 | 14.2 | 0.605 | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
| 106.78 | 0.483 | 14.2 | -- | 0.496 | -- | -- | -- | 0.259 | 7.59 | -- | -- | -- | -- |
| 98.26 | 0.462 | 14.2 | -- | -- | 1.14 | -- | -- | 0.401 | -- | 49.88 | 521 | -- | -- |
| 119.95 | 0.511 | 14.2 | -- | -- | -- | -- | -- | 0.265 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.06 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 10 | 70.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 15 | 71.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 19 | 71.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 24 | 71.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 25 | 71.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 46 | 72.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 47 | 72.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 51 | 72.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 52 | 72.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 54 | 72.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 56 | 72.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 58 | 72.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 65 | 72.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 74 | 72.25 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 96 | 72.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 103 | 72.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 105 | 72.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 136 | 72.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 141 | 72.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 163 | 72.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 197 | 72.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 216 | 72.90 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 224 | 72.92 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 266 | 73.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 269 | 73.06 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 406 | 73.42 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 544 | 73.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 584 | 73.80 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 636 | 73.91 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 17 |
| 807 | 74.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 837 | 74.22 | wind | 9 | 43200 | > th | dose dependent | sin | 12 | NA |
| 934 | 74.37 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 951 | 74.40 | temperature | 20 | 720 | > th | dose dependent | sin | 22 | NA |
| 977 | 74.45 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 978 | 74.45 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |