Os07g0618800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Centrin (Caltractin).
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Os07g0618800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Centrin (Caltractin).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.57 | 0.191 | 12.7 | -0.601 | 0.0497 | -0.204 | 0.0645 | 1.03 | -0.16 | 21.1 | 19 | 1990 | -- | -- |
| 17.34 | 0.194 | 12.7 | -0.584 | 0.0384 | -0.477 | -0.0338 | -- | -0.153 | 20.7 | 18.7 | 3236 | -- | -- |
| 16.58 | 0.19 | 12.7 | -0.601 | 0.0489 | -0.206 | -- | 1.02 | -0.16 | 21.5 | 18.97 | 1983 | -- | -- |
| 17.01 | 0.192 | 12.7 | -0.571 | 0.0406 | -0.572 | -- | -- | -0.146 | 21.7 | 18.1 | 3072 | -- | -- |
| 16.72 | 0.19 | 12.7 | -0.604 | -- | -0.213 | -- | 1 | -0.162 | -- | 18.9 | 2007 | -- | -- |
| 20.78 | 0.214 | 12.7 | -0.311 | 0.0546 | -- | 0.0197 | -- | -0.0621 | 21.4 | -- | -- | -- | -- |
| 20.78 | 0.213 | 12.7 | -0.312 | 0.0544 | -- | -- | -- | -0.0621 | 21.5 | -- | -- | -- | -- |
| 17.12 | 0.193 | 12.7 | -0.544 | -- | -0.615 | -- | -- | -0.153 | -- | 17.95 | 3273 | -- | -- |
| 22.46 | 0.222 | 12.7 | -- | 0.0775 | -0.165 | -- | -- | -0.0462 | 22.5 | 19.35 | 1556 | -- | -- |
| 20.96 | 0.214 | 12.7 | -0.312 | -- | -- | -- | -- | -0.0623 | -- | -- | -- | -- | -- |
| 23.34 | 0.226 | 12.7 | -- | 0.0543 | -- | -- | -- | -0.0274 | 21.1 | -- | -- | -- | -- |
| 22.51 | 0.221 | 12.7 | -- | -- | -0.294 | -- | -- | -0.0508 | -- | 17.41 | 2303 | -- | -- |
| 23.52 | 0.226 | 12.7 | -- | -- | -- | -- | -- | -0.0277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.90 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 13 |
| 2 | 15.91 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 6 | 15.92 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 11 |
| 19 | 15.97 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 6 | NA |
| 33 | 16.01 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 17 |
| 39 | 16.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 14 |
| 81 | 16.09 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 17 |
| 87 | 16.10 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 142 | 16.16 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 216 | 16.25 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 222 | 16.26 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 241 | 16.33 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 11 |
| 245 | 16.35 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 13 |
| 247 | 16.36 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 250 | 16.37 | humidity | 90.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 266 | 16.39 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 285 | 16.42 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 298 | 16.44 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 301 | 16.44 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 304 | 16.45 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 311 | 16.45 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 314 | 16.46 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 322 | 16.47 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 323 | 16.47 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 326 | 16.48 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 327 | 16.48 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 335 | 16.49 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 337 | 16.49 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 379 | 16.52 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 7 | 15 |
| 388 | 16.53 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 408 | 16.55 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 410 | 16.55 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 10 | 11 |
| 411 | 16.55 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 438 | 16.57 | temperature | 20.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 439 | 16.57 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 451 | 16.57 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 4 | 18 |
| 459 | 16.58 | wind | 7.0 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 464 | 16.58 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 466 | 16.58 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 473 | 16.58 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 475 | 16.58 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 478 | 16.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 508 | 16.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 511 | 16.60 | temperature | 20.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 514 | 16.60 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 536 | 16.60 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 7 | 19 |
| 560 | 16.61 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 567 | 16.61 | wind | 7.0 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 607 | 16.62 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 650 | 16.62 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 651 | 16.62 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 652 | 16.62 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 661 | 16.63 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 700 | 16.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 758 | 16.64 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 22 |
| 762 | 16.64 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 22 |
| 781 | 16.65 | temperature | 20.0 | 14400 | > th | dose independent | no | NA | NA |
| 845 | 16.66 | temperature | 20.0 | 14400 | < th | dose independent | no | NA | NA |
| 910 | 16.67 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 952 | 16.68 | temperature | 20.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 956 | 16.68 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 989 | 16.68 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |