Os03g0788500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-dependent protein kinase 2.
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Os03g0788500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-dependent protein kinase 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.58 | 0.496 | 9.98 | -0.812 | 1.88 | 0.476 | -0.377 | -1.43 | -0.444 | 4.18 | 20.5 | 257 | -- | -- |
| 116.99 | 0.504 | 9.96 | -0.663 | 1.92 | 0.797 | -0.0331 | -- | -0.411 | 4.22 | 19.4 | 266 | -- | -- |
| 111.93 | 0.493 | 9.98 | -0.791 | 1.88 | 0.489 | -- | -1.33 | -0.439 | 4.17 | 20.5 | 259 | -- | -- |
| 116.83 | 0.503 | 9.95 | -0.647 | 1.9 | 0.841 | -- | -- | -0.385 | 4.15 | 19.2 | 259 | -- | -- |
| 285.23 | 0.787 | 10 | -0.914 | -- | 0.646 | -- | -1.38 | -0.445 | -- | 19.1 | 2586 | -- | -- |
| 131.41 | 0.537 | 9.92 | -0.364 | 1.81 | -- | 0.166 | -- | -0.265 | 4.21 | -- | -- | -- | -- |
| 131.49 | 0.537 | 9.92 | -0.366 | 1.81 | -- | -- | -- | -0.266 | 4.22 | -- | -- | -- | -- |
| 285.54 | 0.787 | 9.99 | -0.879 | -- | 1.26 | -- | -- | -0.47 | -- | 18.5 | 2605 | -- | -- |
| 125.79 | 0.525 | 9.93 | -- | 1.87 | 0.534 | -- | -- | -0.286 | 4.06 | 19.36 | 201 | -- | -- |
| 308.1 | 0.82 | 9.93 | -0.294 | -- | -- | -- | -- | -0.218 | -- | -- | -- | -- | -- |
| 135.02 | 0.544 | 9.91 | -- | 1.8 | -- | -- | -- | -0.225 | 4.22 | -- | -- | -- | -- |
| 298.38 | 0.805 | 9.94 | -- | -- | 0.985 | -- | -- | -0.279 | -- | 17.6 | 2616 | -- | -- |
| 310.37 | 0.822 | 9.92 | -- | -- | -- | -- | -- | -0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.75 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 5 | 102.22 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 20 | 104.10 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 22 | 104.29 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 26 | 104.47 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 32 | 104.86 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 40 | 105.32 | radiation | 20.0 | 30 | < th | dose independent | rect. | 4 | 19 |
| 52 | 105.54 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 24 | 5 |
| 71 | 106.00 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 83 | 106.20 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 92 | 106.28 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 19 |
| 95 | 106.31 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 103 | 106.42 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 15 |
| 116 | 106.66 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 192 | 107.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 194 | 107.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 238 | 107.59 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 20 |
| 240 | 107.59 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 263 | 107.73 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 299 | 108.03 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 303 | 108.06 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 306 | 108.07 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 331 | 108.21 | radiation | 20.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 334 | 108.23 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 21 | 8 |
| 335 | 108.23 | wind | 5.0 | 270 | < th | dose independent | rect. | 20 | 17 |
| 342 | 108.27 | radiation | 10.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 346 | 108.35 | wind | 5.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 347 | 108.35 | radiation | 10.0 | 270 | < th | dose independent | rect. | 24 | 21 |
| 352 | 108.38 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 385 | 108.57 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 19 |
| 389 | 108.59 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 19 |
| 391 | 108.60 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 419 | 108.72 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 421 | 108.73 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 433 | 108.77 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 471 | 108.98 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 482 | 109.00 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 500 | 109.06 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 519 | 109.15 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 520 | 109.15 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 524 | 109.17 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 526 | 109.18 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 538 | 109.22 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 22 |
| 544 | 109.24 | wind | 9.0 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 546 | 109.24 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 11 |
| 566 | 109.34 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 569 | 109.35 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 574 | 109.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 575 | 109.37 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 593 | 109.46 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 645 | 109.65 | temperature | 20.0 | 270 | < th | dose independent | rect. | 16 | 17 |
| 670 | 109.71 | humidity | 90.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 674 | 109.72 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 693 | 109.77 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 694 | 109.78 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 8 |
| 709 | 109.84 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 18 |
| 710 | 109.84 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 711 | 109.84 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 714 | 109.85 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 735 | 109.92 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 8 |
| 737 | 109.92 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 748 | 109.95 | radiation | 30.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 749 | 109.95 | temperature | 20.0 | 270 | < th | dose independent | rect. | 12 | 21 |
| 753 | 109.96 | radiation | 10.0 | 90 | < th | dose independent | sin | 1 | NA |
| 759 | 109.98 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 765 | 110.00 | temperature | 20.0 | 270 | < th | dose independent | sin | 12 | NA |
| 771 | 110.01 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 780 | 110.03 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 781 | 110.03 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 782 | 110.03 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 792 | 110.04 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 793 | 110.04 | humidity | 80.0 | 30 | > th | dose independent | rect. | 4 | 16 |
| 804 | 110.06 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 819 | 110.09 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 881 | 110.26 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 889 | 110.29 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 897 | 110.31 | radiation | 10.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 921 | 110.37 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 958 | 110.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 4 |
| 960 | 110.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 979 | 110.50 | humidity | 90.0 | 30 | < th | dose dependent | sin | 4 | NA |