BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0121600 Os05g0121600|J080054I05
(130 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0121600 Similar to AP2 domain containing protein RAP2.... 214 1e-56
Os07g0235800 Pathogenesis-related transcriptional factor an... 210 2e-55
Os03g0818800 Similar to Floral homeotic protein 174 2e-44
Os03g0232200 Similar to BABY BOOM 120 2e-28
Os04g0653600 Similar to AINTEGUMENTA-like protein 114 1e-26
Os06g0657500 Similar to ANT (Ovule development protein aint... 113 3e-26
Os03g0313100 Similar to ANT-like protein 113 4e-26
Os09g0423800 Similar to AP2-1 protein (Fragment) 108 8e-25
Os08g0442400 Similar to BABY BOOM 104 2e-23
Os06g0145700 102 6e-23
Os05g0536250 101 1e-22
Os12g0126300 Similar to AP2-1 protein (Fragment) 100 4e-22
Os07g0124700 Similar to PLETHORA1 96 7e-21
Os01g0813300 93 6e-20
Os05g0389000 Similar to AP2-1 protein (Fragment) 69 6e-13
Os01g0899800 Pathogenesis-related transcriptional factor an... 67 4e-12
>Os05g0121600 Similar to AP2 domain containing protein RAP2.7 (Fragment)
Length = 130
Score = 214 bits (546), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/130 (83%), Positives = 108/130 (83%)
Query: 1 AAKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXXXXXXXIK 60
AAKK QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDT IK
Sbjct: 1 AAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIK 60
Query: 61 FRGVEADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTLHKCGRWE 120
FRGVEADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTLHKCGRWE
Sbjct: 61 FRGVEADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTLHKCGRWE 120
Query: 121 ARMGQFLGKK 130
ARMGQFLGKK
Sbjct: 121 ARMGQFLGKK 130
>Os07g0235800 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 436
Score = 210 bits (535), Expect = 2e-55, Method: Composition-based stats.
Identities = 91/116 (78%), Positives = 102/116 (87%)
Query: 15 QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXXXXXXXIKFRGVEADINFNLSD 74
QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDT IKFRG++ADINFNL+D
Sbjct: 122 QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLND 181
Query: 75 YEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 130
YE+D++QM++ +KEEFVH+LRRQSTGF+RGSSKYRGVTLHKCGRWEARMGQ LGKK
Sbjct: 182 YEDDLKQMRNWTKEEFVHILRRQSTGFARGSSKYRGVTLHKCGRWEARMGQLLGKK 237
>Os03g0818800 Similar to Floral homeotic protein
Length = 446
Score = 174 bits (441), Expect = 2e-44, Method: Composition-based stats.
Identities = 83/129 (64%), Positives = 94/129 (72%), Gaps = 19/129 (14%)
Query: 2 AKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXXXXXXXIKF 61
AKK QYRGVTFYRRTGRWESHIW +D IKF
Sbjct: 105 AKKTRRGPRSRSSQYRGVTFYRRTGRWESHIW---------AYD----------RAAIKF 145
Query: 62 RGVEADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTLHKCGRWEA 121
RG+EADINFNLSDYE+D++QM++ +KEEFVH+LRRQSTGF+RGSSK+RGVTLHKCGRWEA
Sbjct: 146 RGLEADINFNLSDYEDDLKQMRNWTKEEFVHILRRQSTGFARGSSKFRGVTLHKCGRWEA 205
Query: 122 RMGQFLGKK 130
RMGQ LGKK
Sbjct: 206 RMGQLLGKK 214
>Os03g0232200 Similar to BABY BOOM
Length = 642
Score = 120 bits (302), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/127 (45%), Positives = 85/127 (66%), Gaps = 11/127 (8%)
Query: 15 QYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTXXXXXXXXXXXXIKFRGV 64
QYRGVT +R TGR+E+H+WD C G+QVYLGG+DT +K+ G+
Sbjct: 291 QYRGVTRHRWTGRYEAHLWDNSCKKDGQTRKGRQVYLGGYDTEDKAARAYDLAALKYWGL 350
Query: 65 EADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTL-HKCGRWEARM 123
INF L +Y +++ +M+ ++++E+V LRR+S+GFSRG+S YRGVT H+ GRW+AR+
Sbjct: 351 STHINFPLENYRDEIEEMERMTRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARI 410
Query: 124 GQFLGKK 130
G+ G K
Sbjct: 411 GRVAGNK 417
>Os04g0653600 Similar to AINTEGUMENTA-like protein
Length = 495
Score = 114 bits (286), Expect = 1e-26, Method: Composition-based stats.
Identities = 57/126 (45%), Positives = 83/126 (65%), Gaps = 11/126 (8%)
Query: 16 YRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVE 65
YRGVT +R TGR+E+H+WD C G+QVYLGG+D +K+ G
Sbjct: 145 YRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPS 204
Query: 66 ADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTL-HKCGRWEARMG 124
NF +++YE+++ +MK ++++EFV LRR+S+GFSRG+S YRGVT H+ GRW+AR+G
Sbjct: 205 TTTNFPVAEYEKELEEMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIG 264
Query: 125 QFLGKK 130
+ G K
Sbjct: 265 RVAGNK 270
>Os06g0657500 Similar to ANT (Ovule development protein aintegumenta)
Length = 469
Score = 113 bits (283), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/126 (45%), Positives = 83/126 (65%), Gaps = 11/126 (8%)
Query: 16 YRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVE 65
YRGVT +R TGR+E+H+WD C G+QVYLGG+D +K+ G
Sbjct: 131 YRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPT 190
Query: 66 ADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTL-HKCGRWEARMG 124
NF +++YE ++ +MKS++++EF+ LRR+S+GFSRG+S YRGVT H+ GRW+AR+G
Sbjct: 191 TTTNFPVANYETELEEMKSMTRQEFIASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIG 250
Query: 125 QFLGKK 130
+ G K
Sbjct: 251 RVAGNK 256
>Os03g0313100 Similar to ANT-like protein
Length = 431
Score = 113 bits (283), Expect = 4e-26, Method: Composition-based stats.
Identities = 57/126 (45%), Positives = 79/126 (62%), Gaps = 11/126 (8%)
Query: 16 YRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVE 65
YRGVT +R TGR+E+H+WD C G+QVYLGG+D +K+ G
Sbjct: 135 YRGVTRHRWTGRYEAHLWDNTCRREGQKRKGRQVYLGGYDIEDKAARAYDLAALKYWGAN 194
Query: 66 ADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTL-HKCGRWEARMG 124
A NF Y +++ +M+ +SK+E V LRR+S+GFSRG+S YRGVT H+ GRW+AR+G
Sbjct: 195 ATTNFPKESYVKEIEEMQKMSKQELVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIG 254
Query: 125 QFLGKK 130
+ G K
Sbjct: 255 RVAGNK 260
>Os09g0423800 Similar to AP2-1 protein (Fragment)
Length = 365
Score = 108 bits (271), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 79/126 (62%), Gaps = 11/126 (8%)
Query: 16 YRGVTFYRRTGRWESHIWDC----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVE 65
YRGVT +R TGR+E+H+WD GKQVYLG +D +K+ G +
Sbjct: 34 YRGVTRHRWTGRFEAHLWDKNSWNESQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPD 93
Query: 66 ADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVT-LHKCGRWEARMG 124
+NF LS YE ++++M+ S+EE++ LRR+S+GFSRG SKYRGV H GRWEAR+G
Sbjct: 94 TILNFPLSAYEGELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIG 153
Query: 125 QFLGKK 130
+ G K
Sbjct: 154 RVFGNK 159
>Os08g0442400 Similar to BABY BOOM
Length = 419
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 80/126 (63%), Gaps = 11/126 (8%)
Query: 16 YRGVTFYRRTGRWESHIWDC----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVE 65
+RGVT +R TGR+E+H+WD G+QVYLG +D +K+ G +
Sbjct: 56 FRGVTRHRWTGRFEAHLWDKNTWNESQSKKGRQVYLGAYDGEEAAARAYDLAALKYWGHD 115
Query: 66 ADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVT-LHKCGRWEARMG 124
+NF LS Y+E++++M+ S+EE++ LRR+S+GFSRG SKYRGV H G+WEAR+G
Sbjct: 116 TVLNFPLSTYDEELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGKWEARIG 175
Query: 125 QFLGKK 130
+ G K
Sbjct: 176 RVFGNK 181
>Os06g0145700
Length = 399
Score = 102 bits (255), Expect = 6e-23, Method: Composition-based stats.
Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 11/127 (8%)
Query: 15 QYRGVTFYRRTGRWESHIWDCG----------KQVYLGGFDTXXXXXXXXXXXXIKFRGV 64
++RGV+ +R TGR+E+H+WD G KQVYLG ++ +K+ G
Sbjct: 81 RFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVYLGAYNEEDAAARAYDLAALKYWGP 140
Query: 65 EADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTL-HKCGRWEARM 123
NF ++DYE++++ M+ +SKEE++ +RR+S GFSRG SKYRGV H GRWEAR+
Sbjct: 141 TTYTNFPVADYEKELKLMQGVSKEEYLASIRRKSNGFSRGVSKYRGVARHHHNGRWEARI 200
Query: 124 GQFLGKK 130
G+ G K
Sbjct: 201 GRVFGNK 207
>Os05g0536250
Length = 431
Score = 101 bits (252), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 11/120 (9%)
Query: 22 YRRTGRWESHIWDC----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVEADINFN 71
+R TGR+E+H+WD GKQVYLG +D +K+ G NF
Sbjct: 97 HRWTGRFEAHLWDKNSWNPTQRKKGKQVYLGAYDEEEAAARAYDLAALKYWGPTTYTNFP 156
Query: 72 LSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTL-HKCGRWEARMGQFLGKK 130
+ DYE++++ M++L+KEE++ LRR+S+GFSRG SKYRGV H+ GRWEAR+G+ G K
Sbjct: 157 VMDYEKELKIMENLTKEEYLASLRRKSSGFSRGVSKYRGVARHHQNGRWEARIGRVFGNK 216
>Os12g0126300 Similar to AP2-1 protein (Fragment)
Length = 443
Score = 100 bits (248), Expect = 4e-22, Method: Composition-based stats.
Identities = 55/124 (44%), Positives = 78/124 (62%), Gaps = 9/124 (7%)
Query: 16 YRGVTFYRRTGRWESHIWD--CG------KQVYLGGFDTXXXXXXXXXXXXIKFRGVEAD 67
YRGVT +R TGR+E+H+WD C K+ G +D+ +K+ G E
Sbjct: 81 YRGVTRHRWTGRFEAHLWDKNCSTSLQNKKKGRQGAYDSEEAAARAYDLAALKYWGPETV 140
Query: 68 INFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTL-HKCGRWEARMGQF 126
+NF L +YE++ +M+ +S+EE++ LRR+S+GFSRG SKYRGV H GRWEAR+G+
Sbjct: 141 LNFPLEEYEKERSEMEGVSREEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRV 200
Query: 127 LGKK 130
LG K
Sbjct: 201 LGNK 204
>Os07g0124700 Similar to PLETHORA1
Length = 331
Score = 95.9 bits (237), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 36 GKQVYLGGFDTXXXXXXXXXXXXIKFRGVEADINFNLSDYEEDMRQMKSLSKEEFVHVLR 95
G+QVYLGG+D +K+ G INF L DY+E++ +MK+++++E+V LR
Sbjct: 8 GRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLEDYQEELEEMKNMTRQEYVAHLR 67
Query: 96 RQSTGFSRGSSKYRGVT-LHKCGRWEARMGQFLGKK 130
R+S+GFSRG+S YRGVT H+ GRW+AR+G+ G K
Sbjct: 68 RKSSGFSRGASMYRGVTRHHQHGRWQARIGRVSGNK 103
>Os01g0813300
Length = 426
Score = 92.8 bits (229), Expect = 6e-20, Method: Composition-based stats.
Identities = 47/124 (37%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 16 YRGVTFYRRTGRWESHIWD--------CGKQVYLGGFDTXXXXXXXXXXXXIKFRGVEAD 67
Y+GV +R +G++E+H+WD K+ G +DT +K G +
Sbjct: 79 YKGVARHRGSGKYEAHLWDKQGWNPNQTRKRGRQGAYDTEEAAARTYDLAALKIWGSDHV 138
Query: 68 INFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTL-HKCGRWEARMGQF 126
+NF + Y +++ +M+ +++EE++ LRR+S+GFSRG SKYRGV H GRWEAR+G+
Sbjct: 139 LNFPIDTYRKELERMQRMTREEYLATLRRKSSGFSRGVSKYRGVAKHHHNGRWEARIGRA 198
Query: 127 LGKK 130
+GKK
Sbjct: 199 VGKK 202
>Os05g0389000 Similar to AP2-1 protein (Fragment)
Length = 300
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 42 GGFDTXXXXXXXXXXXXIKFRGVEADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGF 101
G +D +K+ G INF +SDY D+ +M+ +SKE+++ LRR+S+ F
Sbjct: 1 GAYDDEEAAARAYDLAALKYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAF 60
Query: 102 SRGSSKYRGVT--LHKCGRWEARMGQFLGK 129
SRG KYRG+ LH RW+A +G LG
Sbjct: 61 SRGLPKYRGLPRQLHN-SRWDASLGHLLGN 89
>Os01g0899800 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 343
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Query: 75 YEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVT-LHKCGRWEARMGQFLGKK 130
YE+++ +MK ++++EFV LRR+S+GFSRG+S YRGVT H+ GRW+AR+G+ G K
Sbjct: 1 YEKELEEMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNK 57
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,533,398
Number of extensions: 105307
Number of successful extensions: 472
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 16
Length of query: 130
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 41
Effective length of database: 12,388,755
Effective search space: 507938955
Effective search space used: 507938955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)