Os05g0389000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AP2-1 protein (Fragment).
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Os05g0389000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AP2-1 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.41 | 0.473 | 8.68 | -1.69 | 1.22 | 1.25 | -0.177 | -7.71 | 0.191 | 3.41 | 1 | 6 | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 112.28 | 0.497 | 8.62 | -1.72 | 1.18 | -- | -0.4 | -- | 0.183 | 3.51 | -- | -- | -- | -- |
| 112.77 | 0.497 | 8.62 | -1.71 | 1.18 | -- | -- | -- | 0.186 | 3.48 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 190.76 | 0.645 | 8.62 | -1.66 | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
| 190.15 | 0.645 | 8.57 | -- | 1.15 | -- | -- | -- | 0.376 | 3.49 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 263.78 | 0.758 | 8.58 | -- | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.40 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 6 | 97.04 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 6 | 18 |
| 8 | 97.27 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 6 | 18 |
| 10 | 97.40 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 12 | 97.42 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 13 | 97.42 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 10 | 17 |
| 14 | 97.43 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 16 | 97.43 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 11 | 16 |
| 22 | 97.48 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 26 | 97.50 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 6 | 16 |
| 42 | 97.61 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 18 |
| 43 | 97.62 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 47 | 97.64 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 50 | 97.66 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 6 | 8 |
| 56 | 97.67 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 58 | 97.68 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 14 | 13 |
| 84 | 97.77 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 23 | 18 |
| 87 | 97.78 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 88 | 97.79 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 22 | 20 |
| 105 | 97.83 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 15 | 14 |
| 112 | 97.84 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 128 | 97.87 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 133 | 97.89 | temperature | 15.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 138 | 97.90 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 139 | 97.91 | temperature | 15.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 141 | 97.91 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 4 |
| 154 | 97.96 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 172 | 97.99 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 192 | 98.04 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 216 | 98.10 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 8 |
| 236 | 98.17 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 237 | 98.17 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 1 | 16 |
| 238 | 98.17 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 18 |
| 245 | 98.18 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 7 |
| 268 | 98.23 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 269 | 98.24 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 17 |
| 270 | 98.24 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 24 | 18 |
| 284 | 98.28 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 19 |
| 293 | 98.31 | humidity | 70.0 | 30 | > th | dose independent | rect. | 6 | 18 |
| 320 | 98.36 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 9 |
| 356 | 98.46 | humidity | 70.0 | 30 | > th | dose independent | rect. | 4 | 20 |
| 366 | 98.49 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 370 | 98.50 | humidity | 80.0 | 10 | > th | dose independent | rect. | 6 | 14 |
| 403 | 98.57 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 410 | 98.60 | temperature | 15.0 | 14400 | < th | dose independent | no | NA | NA |
| 423 | 98.63 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 432 | 98.65 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 18 |
| 438 | 98.66 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 440 | 98.66 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 6 | 6 |
| 445 | 98.67 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 448 | 98.67 | humidity | 70.0 | 43200 | > th | dose dependent | no | NA | NA |
| 449 | 98.67 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 6 | 8 |
| 451 | 98.68 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 467 | 98.70 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 472 | 98.72 | temperature | 15.0 | 14400 | < th | dose independent | sin | 0 | NA |
| 473 | 98.72 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 481 | 98.72 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 502 | 98.75 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 4 | NA |
| 518 | 98.77 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 526 | 98.78 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 529 | 98.79 | temperature | 15.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 543 | 98.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 14 |
| 547 | 98.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 579 | 98.85 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 6 | 4 |
| 624 | 98.92 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 24 | 20 |
| 634 | 98.94 | humidity | 90.0 | 90 | < th | dose independent | rect. | 9 | 9 |
| 654 | 98.98 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 669 | 99.01 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 17 | NA |
| 685 | 99.04 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 16 |
| 707 | 99.08 | humidity | 70.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 722 | 99.10 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 744 | 99.14 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 760 | 99.17 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 9 |
| 785 | 99.22 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 786 | 99.22 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 807 | 99.26 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 888 | 99.37 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 15 |
| 896 | 99.38 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 928 | 99.43 | humidity | 70.0 | 10 | > th | dose independent | rect. | 6 | 9 |
| 984 | 99.50 | humidity | 70.0 | 30 | > th | dose independent | rect. | 6 | 16 |