BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0389000 Os05g0389000|AK059324
(300 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0389000 Similar to AP2-1 protein (Fragment) 589 e-169
Os06g0145700 108 3e-24
Os12g0126300 Similar to AP2-1 protein (Fragment) 103 2e-22
Os05g0536250 101 5e-22
Os09g0423800 Similar to AP2-1 protein (Fragment) 101 7e-22
Os08g0442400 Similar to BABY BOOM 100 2e-21
Os01g0813300 94 2e-19
Os04g0653600 Similar to AINTEGUMENTA-like protein 91 1e-18
Os07g0124700 Similar to PLETHORA1 90 2e-18
Os03g0232200 Similar to BABY BOOM 86 3e-17
Os06g0657500 Similar to ANT (Ovule development protein aint... 86 3e-17
Os03g0313100 Similar to ANT-like protein 85 5e-17
Os07g0235800 Pathogenesis-related transcriptional factor an... 70 3e-12
Os03g0818800 Similar to Floral homeotic protein 69 3e-12
Os05g0121600 Similar to AP2 domain containing protein RAP2.... 68 9e-12
>Os05g0389000 Similar to AP2-1 protein (Fragment)
Length = 300
Score = 589 bits (1518), Expect = e-169, Method: Compositional matrix adjust.
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR 78
KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR
Sbjct: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR 78
Query: 79 WDASLGHLLGNDYMSLGKDITLDGKFAGTFGLERKIDLTNYIRWWLPKKTRQSDTSKMEE 138
WDASLGHLLGNDYMSLGKDITLDGKFAGTFGLERKIDLTNYIRWWLPKKTRQSDTSKMEE
Sbjct: 79 WDASLGHLLGNDYMSLGKDITLDGKFAGTFGLERKIDLTNYIRWWLPKKTRQSDTSKMEE 138
Query: 139 VTDEIRAIESSMQRTEPYKFPSLGLHSNSKPSSVVLSACDILSQSDAFKSFSEKSTKLSE 198
VTDEIRAIESSMQRTEPYKFPSLGLHSNSKPSSVVLSACDILSQSDAFKSFSEKSTKLSE
Sbjct: 139 VTDEIRAIESSMQRTEPYKFPSLGLHSNSKPSSVVLSACDILSQSDAFKSFSEKSTKLSE 198
Query: 199 ECTFSKEMDEGKTVTPVPATGHDTTAVNMNVNGLLVQRAPYTLPSVTAQMKNTWNPADPS 258
ECTFSKEMDEGKTVTPVPATGHDTTAVNMNVNGLLVQRAPYTLPSVTAQMKNTWNPADPS
Sbjct: 199 ECTFSKEMDEGKTVTPVPATGHDTTAVNMNVNGLLVQRAPYTLPSVTAQMKNTWNPADPS 258
Query: 259 ADPLFWTNFILPASQPVTMATIATTTFAKNEVSSSDPFHGQE 300
ADPLFWTNFILPASQPVTMATIATTTFAKNEVSSSDPFHGQE
Sbjct: 259 ADPLFWTNFILPASQPVTMATIATTTFAKNEVSSSDPFHGQE 300
>Os06g0145700
Length = 399
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 72/116 (62%), Gaps = 9/116 (7%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR 78
KYWG T NFPV+DY ++L+ MQ +SKE+YL S+RRKS+ FSRG+ KYRG+ R HN R
Sbjct: 136 KYWGPTTYTNFPVADYEKELKLMQGVSKEEYLASIRRKSNGFSRGVSKYRGVARHHHNGR 195
Query: 79 WDASLGHLLGNDYMSLGKDITLD--GKFAGTFGLERK-------IDLTNYIRWWLP 125
W+A +G + GN Y+ LG T + + +E + DL+ YIRW P
Sbjct: 196 WEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKP 251
>Os12g0126300 Similar to AP2-1 protein (Fragment)
Length = 443
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 58/77 (75%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR 78
KYWG T +NFP+ +Y ++ EM+ +S+E+YL SLRR+SS FSRG+ KYRG+ R HN R
Sbjct: 133 KYWGPETVLNFPLEEYEKERSEMEGVSREEYLASLRRRSSGFSRGVSKYRGVARHHHNGR 192
Query: 79 WDASLGHLLGNDYMSLG 95
W+A +G +LGN Y+ LG
Sbjct: 193 WEARIGRVLGNKYLYLG 209
>Os05g0536250
Length = 431
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 69/116 (59%), Gaps = 9/116 (7%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR 78
KYWG T NFPV DY ++L+ M+ ++KE+YL SLRRKSS FSRG+ KYRG+ R N R
Sbjct: 145 KYWGPTTYTNFPVMDYEKELKIMENLTKEEYLASLRRKSSGFSRGVSKYRGVARHHQNGR 204
Query: 79 WDASLGHLLGNDYMSLGKDITLD--GKFAGTFGLERK-------IDLTNYIRWWLP 125
W+A +G + GN Y+ LG T + + +E K DL +YI W P
Sbjct: 205 WEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYKGVNAVTNFDLRSYITWLKP 260
>Os09g0423800 Similar to AP2-1 protein (Fragment)
Length = 365
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 9/116 (7%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR 78
KYWG T +NFP+S Y +L+EM+ S+E+Y+ SLRRKSS FSRG+ KYRG+ R HN R
Sbjct: 88 KYWGPDTILNFPLSAYEGELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGR 147
Query: 79 WDASLGHLLGNDYMSLGKDIT-------LDGKFAGTFGLER--KIDLTNYIRWWLP 125
W+A +G + GN Y+ LG T D GL DL+ YI+W P
Sbjct: 148 WEARIGRVFGNKYLYLGTYATQEEAAMAYDMAAIEYRGLNAVTNFDLSRYIKWLRP 203
>Os08g0442400 Similar to BABY BOOM
Length = 419
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 69/114 (60%), Gaps = 9/114 (7%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR 78
KYWG T +NFP+S Y +L+EM+ S+E+Y+ SLRRKSS FSRG+ KYRG+ R HN +
Sbjct: 110 KYWGHDTVLNFPLSTYDEELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGK 169
Query: 79 WDASLGHLLGNDYMSLGKDITLDGKFAG--TFGLERK-------IDLTNYIRWW 123
W+A +G + GN Y+ LG T + +E + D+ YIRW+
Sbjct: 170 WEARIGRVFGNKYLYLGTYATQEEAAVAYDIAAIEHRGLNAVTNFDINLYIRWY 223
>Os01g0813300
Length = 426
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR 78
K WG+ +NFP+ Y ++LE MQ +++E+YL +LRRKSS FSRG+ KYRG+ + HN R
Sbjct: 131 KIWGSDHVLNFPIDTYRKELERMQRMTREEYLATLRRKSSGFSRGVSKYRGVAKHHHNGR 190
Query: 79 WDASLGHLLGNDYMSLG 95
W+A +G +G Y+ LG
Sbjct: 191 WEARIGRAVGKKYLYLG 207
>Os04g0653600 Similar to AINTEGUMENTA-like protein
Length = 495
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 61/95 (64%), Gaps = 11/95 (11%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR 78
KYWG T NFPV++Y ++LEEM+ +++++++ SLRRKSS FSRG YRG+ R + R
Sbjct: 199 KYWGPSTTTNFPVAEYEKELEEMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGR 258
Query: 79 WDASLGHLLGNDYMSLGKDITLDGKFAGTFGLERK 113
W A +G + GN KD+ L GTFG E +
Sbjct: 259 WQARIGRVAGN------KDLYL-----GTFGTEEE 282
>Os07g0124700 Similar to PLETHORA1
Length = 331
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR 78
KYWG T INFP+ DY +LEEM+ +++++Y+ LRRKSS FSRG YRG+ R + R
Sbjct: 32 KYWGPSTHINFPLEDYQEELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGR 91
Query: 79 WDASLGHLLGNDYMSLG 95
W A +G + GN + LG
Sbjct: 92 WQARIGRVSGNKDLYLG 108
>Os03g0232200 Similar to BABY BOOM
Length = 642
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 52/77 (67%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR 78
KYWG T INFP+ +Y ++EEM+ +++++Y+ LRR+SS FSRG YRG+ R + R
Sbjct: 346 KYWGLSTHINFPLENYRDEIEEMERMTRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGR 405
Query: 79 WDASLGHLLGNDYMSLG 95
W A +G + GN + LG
Sbjct: 406 WQARIGRVAGNKDLYLG 422
>Os06g0657500 Similar to ANT (Ovule development protein aintegumenta)
Length = 469
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR 78
KYWG T NFPV++Y +LEEM+ +++++++ SLRRKSS FSRG YRG+ R + R
Sbjct: 185 KYWGPTTTTNFPVANYETELEEMKSMTRQEFIASLRRKSSGFSRGASIYRGVTRHHQHGR 244
Query: 79 WDASLGHLLGNDYMSLG 95
W A +G + GN + LG
Sbjct: 245 WQARIGRVAGNKDLYLG 261
>Os03g0313100 Similar to ANT-like protein
Length = 431
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 50/77 (64%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSR 78
KYWGA NFP Y +++EEMQ +SK++ + SLRRKSS FSRG YRG+ R + R
Sbjct: 189 KYWGANATTNFPKESYVKEIEEMQKMSKQELVASLRRKSSGFSRGASIYRGVTRHHQHGR 248
Query: 79 WDASLGHLLGNDYMSLG 95
W A +G + GN + LG
Sbjct: 249 WQARIGRVAGNKDLYLG 265
>Os07g0235800 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 436
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHN-S 77
K+ G INF ++DY DL++M+ +KE+++ LRR+S+ F+RG KYRG+ LH
Sbjct: 167 KFRGLDADINFNLNDYEDDLKQMRNWTKEEFVHILRRQSTGFARGSSKYRGV--TLHKCG 224
Query: 78 RWDASLGHLLGNDYMSLG 95
RW+A +G LLG Y+ LG
Sbjct: 225 RWEARMGQLLGKKYIYLG 242
>Os03g0818800 Similar to Floral homeotic protein
Length = 446
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNS- 77
K+ G INF +SDY DL++M+ +KE+++ LRR+S+ F+RG K+RG+ LH
Sbjct: 144 KFRGLEADINFNLSDYEDDLKQMRNWTKEEFVHILRRQSTGFARGSSKFRGV--TLHKCG 201
Query: 78 RWDASLGHLLGNDYMSLG 95
RW+A +G LLG Y+ LG
Sbjct: 202 RWEARMGQLLGKKYIYLG 219
>Os05g0121600 Similar to AP2 domain containing protein RAP2.7 (Fragment)
Length = 130
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 19 KYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHN-S 77
K+ G INF +SDY D+ +M+ +SKE+++ LRR+S+ FSRG KYRG+ LH
Sbjct: 60 KFRGVEADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVT--LHKCG 117
Query: 78 RWDASLGHLLGN 89
RW+A +G LG
Sbjct: 118 RWEARMGQFLGK 129
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,525,653
Number of extensions: 389589
Number of successful extensions: 741
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 15
Length of query: 300
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 200
Effective length of database: 11,814,401
Effective search space: 2362880200
Effective search space used: 2362880200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)