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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0235800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.37 (0.0455) R2 : 0.379
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.56 (0.112) R2dC : 0.266 R2C : 0.296
β3 : -0.926 (0.12) R2dE : 0.0835 R2E : 0.102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.273 (0.0977) R2dN8 : 0.0132 R2N8 : -0.00648
σ : 0.851
deviance : 333.71
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_____
C
peak time of C : 14.3
E
wheather : temperature
threshold : 26.43
memory length : 6950
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
320.19 0.841 4.31 0.896 1.48 -1.28 -1.81 2.08 0.363 14.1 24.96 1312 -- --
321.57 0.835 4.36 0.353 1.47 -1.1 -1.86 -- 0.321 14.1 22.72 1319 -- --
330.79 0.847 4.28 1.05 1.43 -1.37 -- 2.73 0.52 14.5 22.52 1151 -- --
333.32 0.85 4.34 0.417 1.59 -1.08 -- -- 0.441 14.4 21.97 6988 -- --
442.61 0.98 4.23 1.46 -- -2.02 -- 4.24 0.622 -- 23.81 1128 -- --
364.7 0.895 4.41 -0.0128 1.64 -- -1.69 -- 0.0919 14.1 -- -- -- --
375.29 0.907 4.41 -0.0615 1.65 -- -- -- 0.0829 14.3 -- -- -- --
450.92 0.989 4.38 0.336 -- -1.59 -- -- 0.284 -- 23.9 1146 -- --
333.71 0.851 4.37 -- 1.56 -0.926 -- -- 0.273 14.3 26.43 6950 -- --
536.79 1.08 4.43 -0.131 -- -- -- -- 0.0429 -- -- -- -- --
375.39 0.906 4.41 -- 1.65 -- -- -- 0.0897 14.3 -- -- -- --
454.18 0.993 4.38 -- -- -1.52 -- -- 0.241 -- 23.9 1143 -- --
537.24 1.08 4.42 -- -- -- -- -- 0.0574 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 310.67 temperature 20 720 > th dose dependent rect. 17 15
5 311.75 temperature 15 720 > th dose dependent rect. 15 16
12 312.20 temperature 20 720 > th dose dependent sin 12 NA
20 313.04 temperature 15 720 > th dose dependent sin 14 NA
44 314.96 humidity 70 14400 < th dose independent rect. 19 1
51 315.39 humidity 90 720 < th dose dependent rect. 19 4
54 315.42 humidity 90 43200 > th dose independent rect. 10 1
57 315.46 humidity 70 14400 < th dose independent rect. 19 12
59 315.59 temperature 30 4320 < th dose independent rect. 18 6
65 315.82 temperature 30 4320 < th dose independent rect. 18 3
97 316.39 humidity 70 4320 > th dose independent rect. 19 12
99 316.42 temperature 30 4320 < th dose independent rect. 18 11
103 316.48 humidity 70 4320 > th dose independent rect. 19 4
116 316.63 humidity 70 4320 > th dose independent rect. 19 7
121 316.66 humidity 70 4320 > th dose independent rect. 19 10
132 317.14 temperature 30 4320 < th dose independent rect. 18 14
136 317.23 temperature 10 720 > th dose dependent rect. 17 20
156 317.85 humidity 90 43200 < th dose independent rect. 10 1
158 317.87 humidity 70 4320 < th dose dependent rect. 19 1
159 317.91 humidity 90 720 < th dose dependent rect. 21 1
191 318.26 radiation 1 4320 > th dose independent rect. 16 14
192 318.29 radiation 40 1440 < th dose dependent rect. 17 13
198 318.46 radiation 1 4320 > th dose independent rect. 12 18
211 318.58 humidity 80 720 > th dose independent rect. 17 5
215 318.64 radiation 1 4320 > th dose independent rect. 9 21
220 318.70 wind 5 43200 > th dose dependent rect. 5 2
228 318.83 temperature 25 4320 < th dose independent rect. 7 1
231 318.85 radiation 1 4320 < th dose independent rect. 16 14
237 318.97 radiation 1 4320 > th dose independent sin 15 NA
250 319.01 temperature 25 4320 > th dose independent rect. 7 1
252 319.06 radiation 1 4320 < th dose independent rect. 12 18
254 319.08 radiation 1 4320 > th dose independent rect. 16 3
276 319.22 radiation 1 4320 < th dose independent rect. 9 21
295 319.33 radiation 1 1440 > th dose dependent rect. 17 13
299 319.43 temperature 30 1440 < th dose independent rect. 17 16
315 319.53 temperature 20 1440 > th dose dependent rect. 17 6
329 319.58 radiation 1 4320 > th dose independent rect. 12 7
393 319.76 radiation 1 4320 > th dose independent rect. 8 11
417 319.77 temperature 20 1440 > th dose dependent rect. 19 1
450 319.94 radiation 1 4320 < th dose independent sin 15 NA
465 320.01 humidity 90 43200 > th dose dependent rect. 10 1
471 320.07 temperature 25 4320 > th dose dependent rect. 7 1
476 320.09 radiation 30 1440 > th dose independent rect. 15 17
481 320.13 radiation 10 14400 > th dose dependent rect. 17 1
513 320.30 temperature 30 1440 < th dose dependent rect. 19 1
518 320.33 radiation 20 1440 > th dose independent rect. 16 15
525 320.36 radiation 40 14400 < th dose dependent rect. 18 5
528 320.37 radiation 1 4320 < th dose independent rect. 16 11
534 320.39 radiation 10 4320 < th dose independent rect. 6 1
535 320.39 radiation 1 4320 < th dose independent rect. 16 7
550 320.44 radiation 1 4320 < th dose independent rect. 16 3
551 320.44 temperature 30 1440 > th dose independent rect. 17 16
557 320.45 radiation 20 14400 > th dose dependent rect. 16 15
614 320.64 wind 5 43200 < th dose independent rect. 11 1
615 320.64 temperature 30 4320 > th dose independent rect. 18 1
636 320.66 wind 5 43200 > th dose independent rect. 11 1
689 320.79 radiation 40 1440 < th dose dependent rect. 17 6
728 320.86 radiation 30 1440 < th dose independent rect. 15 17
729 320.86 radiation 20 1440 < th dose dependent rect. 18 5
740 320.87 temperature 25 1440 > th dose dependent rect. 11 21
811 320.96 temperature 25 1440 > th dose dependent rect. 11 12
817 320.97 radiation 30 1440 > th dose independent rect. 15 2
833 320.97 radiation 1 4320 > th dose dependent rect. 5 1
859 321.02 radiation 10 4320 < th dose dependent rect. 20 10
872 321.04 radiation 1 4320 < th dose independent rect. 9 17
895 321.06 radiation 1 4320 < th dose independent rect. 9 14
930 321.08 temperature 25 1440 > th dose dependent rect. 13 23
936 321.10 radiation 1 4320 < th dose independent rect. 9 10
960 321.13 radiation 40 1440 < th dose dependent rect. 17 9
987 321.19 radiation 10 4320 < th dose dependent rect. 4 2