FiT-DB / Search/ Help/ Sample detail

Os08g0442400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to BABY BOOM.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.15 (0.0358) R2 : 0.844
β1 : -1.92 (0.133) R2dD : 0.0759 R2D : 0.0435
β2 : 5.52 (0.125) R2dC : 1.31 R2C : 0.537
β3 : 2.89 (0.155) R2dE : 0.237 R2E : -0.545
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.224 (0.0778) R2dN8 : 0.00359 R2N8 : 0.0172
σ : 0.668
deviance : 205.87
__
_____
C
peak time of C : 3.22
E
wheather : temperature
threshold : 7.054
memory length : 264
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.02
open length of G : 18

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
203.37 0.67 9.13 -1.72 5.51 2.84 0.768 1.9 0.261 3.28 8.663 269 1.03 18
207.9 0.672 9.15 -1.9 5.6 2.97 0.479 -- 0.213 3.25 7.784 261 1.04 18
203.09 0.664 9.14 -1.77 5.45 2.75 -- 1.28 0.232 3.18 4.089 260 1.02 18
205.87 0.668 9.15 -1.92 5.52 2.89 -- -- 0.224 3.22 7.054 264 1.02 18
1091.42 1.54 9.14 -1.72 -- 1.97 -- 1.66 0.305 -- 22.64 2705 0.451 18.5
322.49 0.842 9.08 -1.51 4.07 -- -0.53 -- 0.486 4.01 -- -- -- --
323.3 0.842 9.07 -1.5 4.07 -- -- -- 0.489 4.02 -- -- -- --
1038.07 1.51 9.03 -0.919 -- -2.71 -- -- 0.868 -- 23.7 2617 9.88 22
300.44 0.807 9.1 -- 5.45 2.73 -- -- 0.455 3.2 6.206 266 1.03 18
1227.84 1.64 9.09 -1.33 -- -- -- -- 0.597 -- -- -- -- --
382.5 0.915 9.04 -- 4.04 -- -- -- 0.656 4.02 -- -- -- --
1059.83 1.52 9 -- -- -2.85 -- -- 0.981 -- 23.7 2617 9.88 22
1274.68 1.67 9.06 -- -- -- -- -- 0.745 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 204.48 temperature 10.0 270 > th dose dependent rect. 1 18
7 215.24 radiation 1.0 270 < th dose dependent rect. 15 10
11 216.17 temperature 30.0 90 < th dose independent rect. 6 21
15 216.56 radiation 10.0 90 < th dose dependent rect. 3 10
16 216.64 radiation 1.0 270 < th dose dependent rect. 5 20
19 216.92 radiation 1.0 270 < th dose independent rect. 15 10
21 217.09 radiation 10.0 90 < th dose dependent rect. 3 8
23 217.29 temperature 25.0 270 < th dose independent rect. 1 4
27 217.52 temperature 10.0 270 > th dose dependent rect. 10 10
33 217.91 radiation 10.0 90 < th dose dependent rect. 3 6
46 219.28 temperature 20.0 720 > th dose dependent rect. 3 9
55 220.07 radiation 1.0 270 < th dose dependent rect. 1 4
58 220.27 radiation 1.0 270 < th dose independent rect. 1 4
60 220.27 radiation 1.0 270 < th dose independent rect. 6 19
65 220.33 temperature 10.0 270 > th dose independent rect. 1 4
68 220.33 humidity 50.0 270 > th dose independent rect. 1 4
71 220.33 atmosphere 995.0 270 > th dose independent rect. 1 4
72 220.33 atmosphere 1010.0 270 < th dose independent rect. 1 4
77 220.33 temperature 10.0 270 > th dose independent rect. 5 20
78 220.36 wind 9.0 270 < th dose independent rect. 1 4
83 220.84 wind 9.0 270 < th dose independent rect. 5 20
86 220.88 temperature 30.0 270 < th dose independent rect. 17 8
94 221.55 precipitation 0.1 90 < th dose independent rect. 3 16
95 221.55 precipitation 0.1 90 < th dose dependent rect. 3 16
97 221.63 temperature 10.0 90 > th dose independent rect. 19 8
98 221.63 temperature 30.0 90 < th dose independent rect. 19 8
99 221.63 humidity 50.0 90 > th dose independent rect. 19 8
101 221.63 atmosphere 995.0 90 > th dose independent rect. 19 8
102 221.63 radiation 1.0 90 < th dose independent rect. 19 8
107 221.63 temperature 10.0 90 > th dose independent rect. 3 16
108 221.63 atmosphere 1015.0 90 < th dose independent rect. 3 16
109 221.63 radiation 1.0 90 < th dose dependent rect. 19 8
114 221.64 wind 9.0 90 < th dose independent rect. 19 8
115 221.68 precipitation 0.1 270 < th dose independent rect. 1 4
116 221.68 precipitation 0.1 270 < th dose dependent rect. 1 4
122 222.27 humidity 50.0 270 > th dose dependent rect. 1 4
128 222.40 temperature 25.0 90 < th dose independent rect. 3 3
130 222.61 humidity 60.0 270 > th dose independent rect. 17 8
131 222.61 radiation 1.0 270 < th dose dependent rect. 1 10
139 222.84 temperature 25.0 720 < th dose independent rect. 5 6
143 222.93 wind 9.0 90 < th dose independent rect. 3 16
150 223.30 precipitation 0.1 90 < th dose independent rect. 19 8
151 223.30 precipitation 0.1 90 < th dose dependent rect. 19 8
154 223.35 temperature 30.0 720 < th dose dependent rect. 5 4
155 223.36 wind 9.0 90 < th dose independent rect. 3 3
156 223.36 temperature 10.0 90 > th dose independent rect. 3 3
159 223.36 humidity 50.0 90 > th dose independent rect. 3 3
162 223.36 atmosphere 995.0 90 > th dose independent rect. 3 3
163 223.36 atmosphere 1010.0 90 < th dose independent rect. 3 3
165 223.36 radiation 20.0 90 < th dose independent rect. 3 3
178 223.90 humidity 50.0 90 > th dose dependent rect. 3 3
180 223.93 precipitation 0.1 90 < th dose independent rect. 3 3
181 223.93 precipitation 0.1 90 < th dose dependent rect. 3 3
187 224.08 radiation 1.0 270 < th dose independent rect. 1 11
212 225.22 temperature 20.0 720 > th dose dependent rect. 7 5
236 225.65 wind 9.0 90 < th dose dependent rect. 3 3
252 226.02 precipitation 0.1 270 < th dose independent rect. 5 20
253 226.02 precipitation 0.1 270 < th dose dependent rect. 5 20
259 226.17 temperature 30.0 720 < th dose dependent rect. 6 1
262 226.25 wind 9.0 30 < th dose dependent rect. 6 21
268 226.38 wind 9.0 270 < th dose dependent rect. 1 4
269 226.42 temperature 10.0 720 > th dose dependent rect. 2 10
294 226.59 temperature 25.0 720 > th dose dependent rect. 21 15
317 226.85 temperature 10.0 720 > th dose dependent rect. 1 12
324 226.98 atmosphere 995.0 270 > th dose independent rect. 5 20
358 227.40 humidity 60.0 10 > th dose dependent rect. 3 6
369 227.56 radiation 20.0 90 < th dose dependent rect. 3 16
387 227.82 humidity 50.0 270 > th dose dependent rect. 24 6
398 228.05 precipitation 0.1 10 < th dose independent rect. 6 21
400 228.05 precipitation 0.1 10 < th dose dependent rect. 6 21
406 228.23 radiation 10.0 90 < th dose independent rect. 3 8
410 228.28 radiation 10.0 30 < th dose independent rect. 3 5
416 228.34 humidity 50.0 90 > th dose dependent rect. 19 8
422 228.41 wind 1.0 270 > th dose independent rect. 1 4
429 228.49 radiation 30.0 1440 < th dose dependent rect. 18 10
468 228.99 temperature 10.0 270 > th dose independent rect. 1 17
469 228.99 atmosphere 1015.0 270 < th dose independent rect. 1 17
517 229.33 atmosphere 995.0 90 > th dose independent rect. 3 16
522 229.37 precipitation 0.1 270 < th dose independent rect. 1 17
523 229.37 precipitation 0.1 270 < th dose dependent rect. 1 17
532 229.44 wind 9.0 270 < th dose independent rect. 1 17
548 229.55 wind 9.0 90 < th dose dependent rect. 19 8
556 229.65 radiation 1.0 90 < th dose independent rect. 3 10
585 229.86 temperature 25.0 720 > th dose independent rect. 4 8
610 230.07 temperature 25.0 720 > th dose independent rect. 6 6
670 230.54 wind 9.0 270 < th dose independent rect. 14 15
688 230.87 atmosphere 1015.0 270 < th dose dependent rect. 1 4
697 230.96 wind 9.0 270 < th dose independent rect. 5 9
700 230.97 wind 9.0 270 < th dose dependent rect. 6 18
705 231.02 precipitation 0.1 270 < th dose independent rect. 6 18
708 231.02 precipitation 0.1 270 < th dose dependent rect. 6 18
734 231.36 atmosphere 995.0 270 > th dose independent rect. 6 18
750 231.54 temperature 10.0 90 > th dose dependent rect. 3 3
763 231.64 humidity 80.0 30 > th dose dependent rect. 3 9
765 231.65 precipitation 0.1 270 < th dose independent rect. 5 9
766 231.65 precipitation 0.1 270 < th dose dependent rect. 5 9
769 231.71 temperature 30.0 270 < th dose dependent rect. 1 4
775 231.76 wind 1.0 270 > th dose independent rect. 19 6
787 231.88 temperature 10.0 270 > th dose independent rect. 5 9
788 231.88 atmosphere 995.0 270 > th dose independent rect. 5 9
789 231.88 atmosphere 1015.0 270 < th dose independent rect. 5 9
790 231.88 temperature 10.0 270 > th dose independent rect. 14 15
793 231.94 temperature 10.0 720 > th dose dependent rect. 7 6
794 231.94 temperature 30.0 270 < th dose dependent rect. 6 18
884 232.33 radiation 10.0 90 < th dose independent rect. 3 16
899 232.53 temperature 20.0 720 > th dose dependent sin 5 NA
965 233.01 temperature 25.0 720 > th dose dependent sin 7 NA
977 233.11 temperature 30.0 90 < th dose dependent rect. 3 3
983 233.14 radiation 30.0 1440 < th dose independent rect. 4 3
997 233.25 temperature 10.0 270 > th dose dependent rect. 19 6