Os03g0232200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to BABY BOOM.
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Os03g0232200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to BABY BOOM.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.37 | 0.306 | 2.91 | -0.103 | 0.0301 | -0.231 | -0.161 | 1.25 | 0.0122 | 23 | 1.101 | 15 | -- | -- |
| 43.75 | 0.31 | 2.89 | -0.0446 | 0.0301 | -0.132 | -0.27 | -- | 0.0267 | 1.31 | 1.145 | 7 | -- | -- |
| 42.46 | 0.303 | 2.91 | -0.101 | 0.0315 | -0.241 | -- | 1.33 | 0.01 | 22.3 | 1.1 | 16 | -- | -- |
| 44.05 | 0.311 | 2.89 | -0.0349 | 0.0309 | -0.13 | -- | -- | 0.0282 | 0.666 | 1.184 | 7 | -- | -- |
| 42.52 | 0.304 | 2.91 | -0.101 | -- | -0.241 | -- | 1.33 | 0.0102 | -- | 1.11 | 16 | -- | -- |
| 44.45 | 0.313 | 2.89 | -0.0271 | 0.0646 | -- | -0.257 | -- | 0.0219 | 2.13 | -- | -- | -- | -- |
| 44.7 | 0.313 | 2.89 | -0.0197 | 0.066 | -- | -- | -- | 0.0233 | 2.76 | -- | -- | -- | -- |
| 44.1 | 0.311 | 2.89 | -0.0348 | -- | -0.138 | -- | -- | 0.0289 | -- | 1.184 | 7 | -- | -- |
| 44.08 | 0.311 | 2.89 | -- | 0.0309 | -0.127 | -- | -- | 0.0319 | 0.703 | 1.184 | 7 | -- | -- |
| 44.95 | 0.313 | 2.89 | -0.0169 | -- | -- | -- | -- | 0.0249 | -- | -- | -- | -- | -- |
| 44.71 | 0.313 | 2.89 | -- | 0.0657 | -- | -- | -- | 0.0255 | 2.76 | -- | -- | -- | -- |
| 44.13 | 0.31 | 2.89 | -- | -- | -0.135 | -- | -- | 0.0327 | -- | 1.184 | 7 | -- | -- |
| 44.96 | 0.313 | 2.89 | -- | -- | -- | -- | -- | 0.0268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.41 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 2 | 33.50 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 3 | 33.53 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 5 | 33.56 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 7 | 33.59 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 11 | 33.64 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 15 | 33.73 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 19 | 33.76 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 21 | 33.76 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 22 | 33.76 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 26 | 33.76 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 28 | 33.76 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 33 | 33.76 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 34 | 33.76 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 35 | 33.76 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 36 | 33.76 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 41 | 33.76 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 49 | 34.19 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 50 | 34.43 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 54 | 34.82 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 100 | 36.53 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 106 | 36.58 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 107 | 36.58 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 110 | 36.58 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 114 | 36.58 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 123 | 36.58 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 124 | 36.58 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 144 | 36.58 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 147 | 36.58 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 158 | 36.61 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 168 | 37.65 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 176 | 38.21 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 177 | 38.21 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 178 | 38.23 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 247 | 40.14 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 3 |
| 266 | 40.45 | temperature | 20.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 267 | 40.45 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 277 | 40.45 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 278 | 40.45 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 19 | 1 |
| 293 | 40.48 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 299 | 40.55 | humidity | 90.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 302 | 40.58 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 316 | 40.77 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 414 | 41.51 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 16 | 5 |
| 492 | 41.76 | wind | 3.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 522 | 41.88 | wind | 1.0 | 10 | > th | dose independent | rect. | 20 | 23 |
| 559 | 41.96 | wind | 3.0 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 582 | 42.00 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 12 | 9 |
| 587 | 42.02 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 647 | 42.08 | wind | 1.0 | 90 | > th | dose independent | rect. | 3 | 23 |
| 648 | 42.08 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 4 |
| 658 | 42.10 | temperature | 25.0 | 720 | < th | dose independent | rect. | 20 | 5 |
| 673 | 42.12 | wind | 1.0 | 10 | > th | dose independent | sin | 7 | NA |
| 690 | 42.14 | wind | 1.0 | 10 | > th | dose independent | rect. | 23 | 23 |
| 748 | 42.17 | temperature | 25.0 | 270 | < th | dose independent | rect. | 20 | 12 |
| 766 | 42.18 | humidity | 90.0 | 10 | > th | dose independent | rect. | 2 | 19 |
| 770 | 42.18 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 12 | 8 |
| 787 | 42.21 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 788 | 42.21 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 791 | 42.21 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 795 | 42.21 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 804 | 42.21 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 805 | 42.21 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 816 | 42.21 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 844 | 42.23 | wind | 1.0 | 10 | < th | dose independent | rect. | 21 | 6 |
| 853 | 42.23 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 868 | 42.24 | wind | 3.0 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 897 | 42.27 | wind | 3.0 | 10 | < th | dose dependent | rect. | 19 | 9 |
| 902 | 42.29 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 944 | 42.29 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 14 | 12 |
| 984 | 42.33 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 995 | 42.35 | wind | 3.0 | 10 | < th | dose independent | rect. | 19 | 2 |