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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0657500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ANT (Ovule development protein aintegumenta).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.78 (0.0182) R2 : 0.454
β1 : 0.686 (0.0768) R2dD : 0.146 R2D : -0.153
β2 : -- (--) R2dC : -- R2C : --
β3 : -7.7 (0.698) R2dE : 2.43 R2E : -3.85
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 78.8 (5.39) R2dD*E : 4.36 R2D*E : -2.06
γ1 : 0.0255 (0.0369) R2dN8 : 0.00077 R2N8 : -0.0362
σ : 0.323
deviance : 48.12
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.05
memory length : 11
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.94
open length of G : 1.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.3 0.323 2.79 0.68 0.0902 -7.71 -0.388 78.9 0.0212 4.47 30.05 11 9.94 1.03
68.56 0.389 2.87 0.0399 0.0882 2.17 -0.384 -- 0.0223 4.29 30.05 11 9.94 1.03
47.67 0.322 2.78 0.684 0.0932 -7.74 -- 79 0.0234 5.47 30.04 11 9.95 1.88
68.76 0.386 2.86 0.0223 0.1 2.09 -- -- 0.0304 5.02 30.13 13 9.96 1.84
48.12 0.323 2.78 0.686 -- -7.7 -- 78.8 0.0255 -- 30.05 11 9.94 1.88
86.95 0.437 2.87 0.0755 0.132 -- 0.151 -- 0.00463 8.06 -- -- -- --
86.97 0.437 2.87 0.0785 0.137 -- -- -- 0.00382 7.27 -- -- -- --
69.3 0.388 2.87 0.044 -- 2.07 -- -- 0.0346 -- 30.14 13 9.96 1.83
68.78 0.386 2.87 -- 0.103 2.08 -- -- 0.0285 4.53 30.1 13 9.96 1.83
87.97 0.438 2.87 0.0809 -- -- -- -- 0.00615 -- -- -- -- --
87.13 0.437 2.87 -- 0.138 -- -- -- -0.00492 7.24 -- -- -- --
69.35 0.388 2.87 -- -- 2.08 -- -- 0.0307 -- 30.05 13 9.95 1.83
88.14 0.438 2.87 -- -- -- -- -- -0.00283 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.91 temperature 30 10 > th dose independent rect. 10 1
18 48.42 temperature 30 10 > th dose dependent rect. 10 1
228 69.76 atmosphere 1000 10 < th dose independent rect. 8 2
230 70.16 atmosphere 1000 90 < th dose independent rect. 8 1
234 70.42 temperature 30 30 < th dose independent sin 8 NA
269 71.79 temperature 30 10 > th dose independent sin 8 NA
397 73.88 atmosphere 1005 10 < th dose dependent rect. 8 2
406 74.04 atmosphere 1005 10 < th dose dependent rect. 10 1
408 74.05 atmosphere 1000 270 < th dose independent rect. 6 1
415 74.15 atmosphere 1000 90 < th dose dependent rect. 8 1
506 76.09 humidity 70 90 < th dose dependent rect. 7 2
632 77.79 atmosphere 1005 270 < th dose dependent rect. 6 1
709 78.52 radiation 40 10 > th dose independent rect. 9 2
768 78.58 radiation 40 10 > th dose dependent rect. 9 2
813 78.85 radiation 40 10 > th dose independent sin 11 NA
888 79.11 humidity 70 90 < th dose independent rect. 7 2
945 79.30 temperature 25 30 > th dose dependent sin 8 NA
979 79.57 radiation 30 10 > th dose dependent sin 11 NA