Os05g0121600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AP2 domain containing protein RAP2.7 (Fragment).
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Os05g0121600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AP2 domain containing protein RAP2.7 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.16 | 0.434 | 13 | -0.31 | 0.324 | 0.94 | 1.23 | 0.919 | -0.0429 | 17.4 | 5.083 | 37 | -- | -- |
| 86.12 | 0.432 | 13 | -0.292 | 0.257 | 0.815 | 1.5 | -- | -0.0352 | 20 | 5.499 | 20 | -- | -- |
| 88.67 | 0.439 | 13 | -0.308 | 0.323 | 0.942 | -- | 0.871 | -0.0499 | 17.1 | 5.385 | 31 | -- | -- |
| 92.27 | 0.447 | 13 | -0.307 | 0.315 | 1.01 | -- | -- | -0.0312 | 15.9 | 5.39 | 24 | -- | -- |
| 91.7 | 0.448 | 13 | -0.309 | -- | 0.911 | -- | 0.823 | -0.065 | -- | 5.632 | 18 | -- | -- |
| 105.74 | 0.482 | 13 | -0.274 | 1.07 | -- | 1.14 | -- | -0.097 | 22.7 | -- | -- | -- | -- |
| 111.05 | 0.493 | 13 | -0.322 | 1.06 | -- | -- | -- | -0.102 | 22.8 | -- | -- | -- | -- |
| 95.81 | 0.456 | 13 | -0.317 | -- | 0.907 | -- | -- | -0.0486 | -- | 5.417 | 16 | -- | -- |
| 94.69 | 0.453 | 13 | -- | 0.31 | 1.02 | -- | -- | 0.00305 | 15.8 | 5.396 | 20 | -- | -- |
| 181.19 | 0.629 | 13 | -0.3 | -- | -- | -- | -- | -0.0946 | -- | -- | -- | -- | -- |
| 113.79 | 0.499 | 13 | -- | 1.06 | -- | -- | -- | -0.0656 | 22.8 | -- | -- | -- | -- |
| 98.28 | 0.462 | 13 | -- | -- | 0.906 | -- | -- | -0.0115 | -- | 5.43 | 14 | -- | -- |
| 183.56 | 0.632 | 13 | -- | -- | -- | -- | -- | -0.0614 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.45 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 14 |
| 12 | 88.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 13 | 88.49 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 23 |
| 14 | 88.83 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 20 |
| 15 | 88.85 | radiation | 1 | 90 | > th | dose independent | no | NA | NA |
| 71 | 88.88 | radiation | 1 | 90 | < th | dose independent | no | NA | NA |
| 72 | 88.89 | radiation | 1 | 90 | < th | dose independent | rect. | 9 | 23 |
| 73 | 88.93 | radiation | 1 | 90 | < th | dose independent | rect. | 11 | 23 |
| 78 | 88.99 | radiation | 10 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 81 | 89.03 | radiation | 1 | 90 | < th | dose independent | rect. | 15 | 23 |
| 91 | 89.29 | radiation | 1 | 90 | < th | dose independent | rect. | 19 | 22 |
| 106 | 89.34 | radiation | 10 | 10 | < th | dose dependent | rect. | 18 | 23 |
| 107 | 89.36 | radiation | 10 | 10 | < th | dose dependent | sin | 10 | NA |
| 109 | 89.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 110 | 89.44 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 20 |
| 192 | 89.82 | radiation | 1 | 30 | < th | dose independent | rect. | 7 | 23 |
| 197 | 89.90 | radiation | 10 | 30 | < th | dose dependent | rect. | 13 | 21 |
| 203 | 89.95 | radiation | 10 | 30 | < th | dose dependent | no | NA | NA |
| 207 | 89.98 | radiation | 10 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 219 | 90.00 | radiation | 10 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 237 | 90.25 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 22 |
| 238 | 90.28 | radiation | 1 | 30 | > th | dose independent | rect. | 15 | 23 |
| 246 | 90.34 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 290 | 90.52 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 22 |
| 328 | 90.82 | radiation | 1 | 30 | > th | dose independent | rect. | 9 | 23 |
| 336 | 90.90 | radiation | 1 | 90 | < th | dose independent | rect. | 23 | 23 |
| 348 | 91.06 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 352 | 91.08 | radiation | 1 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 365 | 91.17 | radiation | 1 | 30 | > th | dose independent | sin | 3 | NA |
| 377 | 91.35 | radiation | 1 | 30 | < th | dose independent | sin | 3 | NA |
| 379 | 91.38 | radiation | 1 | 720 | < th | dose dependent | sin | 12 | NA |
| 384 | 91.42 | radiation | 1 | 90 | < th | dose independent | sin | 9 | NA |
| 397 | 91.55 | radiation | 1 | 90 | > th | dose independent | rect. | 11 | 23 |
| 407 | 91.61 | radiation | 1 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 412 | 91.68 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 416 | 91.70 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 423 | 91.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 22 |
| 432 | 91.79 | radiation | 10 | 10 | < th | dose dependent | rect. | 18 | 16 |
| 440 | 91.82 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 444 | 91.86 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 445 | 91.86 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 19 |
| 456 | 91.88 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 22 |
| 471 | 91.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 520 | 92.00 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 534 | 92.06 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 13 |
| 569 | 92.18 | radiation | 1 | 90 | < th | dose independent | rect. | 1 | 23 |
| 577 | 92.23 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 11 |
| 641 | 92.35 | radiation | 10 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 789 | 92.76 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 839 | 92.98 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 22 |
| 841 | 93.00 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 2 |
| 868 | 93.08 | radiation | 1 | 720 | > th | dose independent | sin | 12 | NA |
| 871 | 93.11 | radiation | 1 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 876 | 93.13 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 23 |
| 893 | 93.15 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 18 |
| 920 | 93.23 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 23 |
| 922 | 93.24 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 971 | 93.25 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |