Os04g0653600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AINTEGUMENTA-like protein.
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Os04g0653600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AINTEGUMENTA-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 173.08 | 0.618 | 5.68 | 3.2 | 0.585 | 4.1 | -0.295 | 3.54 | 0.102 | 8.46 | 18.9 | 7530 | -- | -- |
| 181.04 | 0.627 | 5.52 | 3.43 | 0.58 | 3.05 | -0.0757 | -- | 0.207 | 8.13 | 19 | 7708 | -- | -- |
| 173.02 | 0.613 | 5.68 | 3.2 | 0.576 | 4.12 | -- | 3.56 | 0.0987 | 8.35 | 18.93 | 7702 | -- | -- |
| 180.81 | 0.626 | 5.53 | 3.4 | 0.551 | 3.08 | -- | -- | 0.184 | 8.31 | 19 | 7772 | -- | -- |
| 191 | 0.644 | 5.69 | 3.25 | -- | 4.18 | -- | 3.6 | 0.125 | -- | 18.91 | 7811 | -- | -- |
| 286.75 | 0.794 | 5.71 | 1.34 | 0.606 | -- | -0.258 | -- | -0.583 | 8.68 | -- | -- | -- | -- |
| 286.96 | 0.793 | 5.71 | 1.33 | 0.607 | -- | -- | -- | -0.583 | 8.61 | -- | -- | -- | -- |
| 198.84 | 0.657 | 5.55 | 3.36 | -- | 3.02 | -- | -- | 0.169 | -- | 19 | 7891 | -- | -- |
| 324.52 | 0.844 | 5.73 | -- | 0.654 | 0.552 | -- | -- | -0.675 | 8.97 | 19 | 7772 | -- | -- |
| 307.73 | 0.82 | 5.73 | 1.33 | -- | -- | -- | -- | -0.578 | -- | -- | -- | -- | -- |
| 333.47 | 0.854 | 5.74 | -- | 0.612 | -- | -- | -- | -0.731 | 8.45 | -- | -- | -- | -- |
| 261.39 | 0.753 | 5.67 | -- | -- | 1.34 | -- | -- | -0.312 | -- | 22.3 | 757 | -- | -- |
| 354.4 | 0.879 | 5.76 | -- | -- | -- | -- | -- | -0.725 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.14 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 2 | 173.04 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 3 | 173.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 4 | 173.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 13 | 173.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 14 | 173.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 20 | 173.87 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 27 | 174.17 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 28 | 174.28 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 30 | 174.29 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 73 | 175.40 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 106 | 176.42 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 170 | 178.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 22 |
| 176 | 178.30 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 186 | 178.49 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 194 | 178.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 195 | 178.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 203 | 178.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 207 | 178.66 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 208 | 178.67 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 215 | 178.72 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 216 | 178.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 233 | 178.91 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 245 | 179.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 272 | 179.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 278 | 179.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 281 | 179.60 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 282 | 179.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 320 | 180.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 343 | 180.28 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 345 | 180.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 358 | 180.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 363 | 180.54 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 400 | 180.94 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 403 | 180.95 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 419 | 181.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 444 | 181.29 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 454 | 181.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 473 | 181.47 | wind | 7 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 480 | 181.53 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 7 |
| 482 | 181.56 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 537 | 181.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 614 | 182.53 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 628 | 182.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 647 | 182.77 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 721 | 183.31 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 761 | 183.56 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 781 | 183.71 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 810 | 183.97 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 8 | NA |
| 816 | 184.01 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 8 | NA |
| 905 | 184.52 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |