BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0305400 Os03g0305400|AK071397
(180 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0305400 Universal stress protein (Usp) family protein 343 3e-95
Os01g0303800 Universal stress protein (Usp) family protein 149 1e-36
AK103732 149 1e-36
Os02g0760500 Similar to ER6 protein (Fragment) 100 6e-22
Os12g0552400 Universal stress protein (Usp) family protein 97 7e-21
Os07g0673400 Universal stress protein (Usp) family protein 95 3e-20
Os12g0552500 Universal stress protein (Usp) family protein 90 1e-18
Os01g0511100 Universal stress protein (Usp) family protein 89 2e-18
Os11g0622150 Universal stress protein (Usp) family protein 88 4e-18
Os05g0355400 Universal stress protein (Usp) family protein 83 9e-17
Os03g0750000 Universal stress protein (Usp) family protein 72 3e-13
Os05g0157200 Universal stress protein (Usp) family protein 69 2e-12
Os10g0437500 Universal stress protein (Usp) family protein 67 7e-12
Os02g0707900 Universal stress protein (Usp) family protein 67 7e-12
Os02g0773200 Universal stress protein (Usp) family protein 66 1e-11
>Os03g0305400 Universal stress protein (Usp) family protein
Length = 180
Score = 343 bits (881), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 171/180 (95%), Positives = 171/180 (95%)
Query: 1 MDRATEEETAATGRRILVAVDEGDESVHALKWCLASFAKRXXXXXXXXXDTIILLYVRPP 60
MDRATEEETAATGRRILVAVDEGDESVHALKWCLASFAKR DTIILLYVRPP
Sbjct: 1 MDRATEEETAATGRRILVAVDEGDESVHALKWCLASFAKRGGGGGAAPPDTIILLYVRPP 60
Query: 61 PPTYSVLDASGYVFSDEVAAAIDGYSKEVAEAVVEKAQKLCTLYGKEVGGDGEAGHEMKV 120
PPTYSVLDASGYVFSDEVAAAIDGYSKEVAEAVVEKAQKLCTLYGKEVGGDGEAGHEMKV
Sbjct: 61 PPTYSVLDASGYVFSDEVAAAIDGYSKEVAEAVVEKAQKLCTLYGKEVGGDGEAGHEMKV 120
Query: 121 EVKVAVGDARNVICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVKS 180
EVKVAVGDARNVICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVKS
Sbjct: 121 EVKVAVGDARNVICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVKS 180
>Os01g0303800 Universal stress protein (Usp) family protein
Length = 182
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 106/167 (63%), Gaps = 17/167 (10%)
Query: 13 GRRILVAVDEGDESVHALKWCLASFAKRXXXXXXXXXDTIILLYVRPPPPTYSVLDASGY 72
GRRI+VAVDE +ES HAL WCLA+ DT++LL+ R P P Y+ +D+SGY
Sbjct: 30 GRRIVVAVDESEESTHALTWCLANVVS------SSGGDTLVLLHARRPRPVYAAMDSSGY 83
Query: 73 VFSDEVAAAIDGYSKEVAEAVVEKAQKLCTLYGKEVGGDGEAGHEMKVEVKVAVGDARNV 132
+ + +V A++D Y+ V+ A V KA+ +C + + VE V GD R+V
Sbjct: 84 MMTSDVMASMDKYAAAVSAAAVGKAKHICAAFP-----------HVTVETMVESGDPRDV 132
Query: 133 ICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVK 179
IC +K+ AD+LVMG+HGYGL +RA LGSVS++C +N CPVLIVK
Sbjct: 133 ICDATEKMAADLLVMGTHGYGLIQRAFLGSVSNHCAQNCKCPVLIVK 179
>AK103732
Length = 182
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 106/167 (63%), Gaps = 17/167 (10%)
Query: 13 GRRILVAVDEGDESVHALKWCLASFAKRXXXXXXXXXDTIILLYVRPPPPTYSVLDASGY 72
GRRI+VAVDE +ES HAL WCLA+ DT++LL+ R P P Y+ +D+SGY
Sbjct: 30 GRRIVVAVDESEESTHALTWCLANVVS------SSGGDTLVLLHARRPRPVYAAMDSSGY 83
Query: 73 VFSDEVAAAIDGYSKEVAEAVVEKAQKLCTLYGKEVGGDGEAGHEMKVEVKVAVGDARNV 132
+ + +V A++D Y+ V+ A V KA+ +C + + VE V GD R+V
Sbjct: 84 MMTSDVMASMDKYAAAVSAAAVGKAKHICAAFP-----------HVTVETMVESGDPRDV 132
Query: 133 ICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVK 179
IC +K+ AD+LVMG+HGYGL +RA LGSVS++C +N CPVLIVK
Sbjct: 133 ICDATEKMAADLLVMGTHGYGLIQRAFLGSVSNHCAQNCKCPVLIVK 179
>Os02g0760500 Similar to ER6 protein (Fragment)
Length = 162
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 97/180 (53%), Gaps = 32/180 (17%)
Query: 11 ATGR--RILVAVDEGDESVHALKWCLASFAKRXXXXXXXXXDTIILLYVRPPPPTYSVLD 68
ATG ++VAVD +ES++AL+W L + R +++L+V+PPP + L+
Sbjct: 2 ATGNLASVVVAVDGSEESMNALRWALDNLRLRPD-------GALVVLHVQPPPSIAAGLN 54
Query: 69 ASGYVFSD----EVAA---AIDGYSKEVAEAVVEKAQKLCTLYGKEVGGDGEAGHEMKVE 121
F EV A AI+ + + + +A+++ A K+C+ E VE
Sbjct: 55 PGPIPFGGPSEVEVPAFTQAIEAHQRRITQAILDHALKICS--------------EKNVE 100
Query: 122 VK--VAVGDARNVICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVK 179
VK V VGD + IC++ L AD+LVMG +G KR LGSVS+YC+ N CPV+++K
Sbjct: 101 VKTDVVVGDPKEKICEVTANLKADLLVMGCRAFGPLKRMFLGSVSNYCINNVVCPVVVIK 160
>Os12g0552400 Universal stress protein (Usp) family protein
Length = 160
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 20/164 (12%)
Query: 16 ILVAVDEGDESVHALKWCLASFAKRXXXXXXXXXDTIILLYVRPPPPTYSVLDASGYVFS 75
+LV +D+ D S +AL+W L F L+ + PP +V+ +G + +
Sbjct: 9 MLVGIDDSDHSYYALEWTLKHF------FALGQPQQYHLVLLTSKPPASAVIGIAG-LGT 61
Query: 76 DEVAAAIDGYSKEVAEAVVEKAQKLCTLYGKEVGGDGEAGHEMKVEVKVAVGDARNVICQ 135
E+ ++ K A V+EKA+++C+ + +V GDARN++C+
Sbjct: 62 TELLPTLELDLKRGAARVIEKAKEMCS-------------QVIDASYEVLEGDARNILCE 108
Query: 136 MADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVK 179
++ AD+LV+GSHGYG +KRA+LGSVSDYC +A+C V+IVK
Sbjct: 109 AVERHHADMLVVGSHGYGAWKRAVLGSVSDYCSHHAHCTVMIVK 152
>Os07g0673400 Universal stress protein (Usp) family protein
Length = 171
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 17/164 (10%)
Query: 16 ILVAVDEGDESVHALKWCLASFAKRXXXXXXXXXDTIILLYVRPPPPTYSVLDASGYVFS 75
++V VD+ + S +AL+W + A +++++ +P P SV+ S
Sbjct: 13 VVVGVDDSEHSNYALEWTMQHLASGMAGSGGA---ELVIVHAKPSPS--SVVGFGAGPGS 67
Query: 76 DEVAAAIDGYSKEVAEAVVEKAQKLCTLYGKEVGGDGEAGHEMKVEVKVAVGDARNVICQ 135
EV ++ ++ AE VVEKA++LC + M ++V G+ R V+C
Sbjct: 68 GEVVRYVEADLRKTAEDVVEKARRLCI------------ANAMHALIEVIEGEPRYVLCN 115
Query: 136 MADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVK 179
+K A +LV+GSHGYG KRA LGSVSDYC +A+C V+IVK
Sbjct: 116 AVEKHSAGLLVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVK 159
>Os12g0552500 Universal stress protein (Usp) family protein
Length = 169
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 87/164 (53%), Gaps = 18/164 (10%)
Query: 16 ILVAVDEGDESVHALKWCLASFAKRXXXXXXXXXDTIILLYVRPPPPTYSVLDASGYVFS 75
++V VDE + S +AL+W L F L+ V P S + +G +
Sbjct: 18 MVVGVDESEHSYYALQWTLRHF----FAAAAGQPPQYRLVVVNAKPTAASAVGLAGPGAA 73
Query: 76 DEVAAAIDGYSKEVAEAVVEKAQKLCTLYGKEVGGDGEAGHEMKVEVKVAVGDARNVICQ 135
D V ++ K+ + V+EKA++LC + +V GDARNV+C+
Sbjct: 74 D-VLPFVEADLKKSSMRVIEKARELCAQVSDAL-------------FEVLEGDARNVLCE 119
Query: 136 MADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVK 179
++ A++LV+GSHGYG KRA+LGSVSDYC +A+C V+IVK
Sbjct: 120 SVERHQAEMLVVGSHGYGAIKRAVLGSVSDYCSHHAHCTVMIVK 163
>Os01g0511100 Universal stress protein (Usp) family protein
Length = 167
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 96/172 (55%), Gaps = 25/172 (14%)
Query: 14 RRILVAVDEGDESVHALKWCLASFAKRXXXXXXXXXDTIILLYVRPPPPTYSVLDAS--- 70
++ +VAVDE + S HAL+W L + A +++L V+P P V AS
Sbjct: 12 QKAMVAVDESEFSHHALEWALRNLAP-------TIAPPLLVLTVQPLLPLGYVSAASFGS 64
Query: 71 ---GYVFSDEVAAAIDGYSKEVAEAVVEKAQKLCTLYGKEVGGDGEAGHEMKVEVKVAVG 127
V + E+ A+ +++++A+++KA+++C A H + VE + VG
Sbjct: 65 PLGTPVVAPELIKAMQEQQQQLSQALLDKAKQIC------------AQHGVAVETMIKVG 112
Query: 128 DARNVICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVK 179
D + +ICQ A++ D+L++GSH G +R LGSVS+YC+ ++ CPVL+VK
Sbjct: 113 DPKEMICQAAEESKVDLLIVGSHSRGPVQRLFLGSVSNYCMHHSKCPVLVVK 164
>Os11g0622150 Universal stress protein (Usp) family protein
Length = 317
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/42 (95%), Positives = 41/42 (97%)
Query: 138 DKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVK 179
DKLGADVLVMGSHGYGLFKRALLG VSDYCVRNA+CPVLIVK
Sbjct: 276 DKLGADVLVMGSHGYGLFKRALLGRVSDYCVRNASCPVLIVK 317
>Os05g0355400 Universal stress protein (Usp) family protein
Length = 96
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 50/63 (79%)
Query: 117 EMKVEVKVAVGDARNVICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVL 176
++KVE +V GD R+VIC +K GAD++VMGSHGYG +R LLGSVS++CV++ CPV+
Sbjct: 25 QVKVETRVEKGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTLLGSVSNHCVQHCKCPVV 84
Query: 177 IVK 179
+VK
Sbjct: 85 VVK 87
>Os03g0750000 Universal stress protein (Usp) family protein
Length = 128
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 12/94 (12%)
Query: 86 SKEVAEAVVEKAQKLCTLYGKEVGGDGEAGHEMKVEVKVAVGDARNVICQMADKLGADVL 145
+E++ VV +A +C +EV G + GDA+ ICQ +++ AD+L
Sbjct: 40 QEEISRKVVSRALDVCK--QREVSATG----------AIVEGDAKEAICQAVEEMHADML 87
Query: 146 VMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVK 179
V+GS G G KRA LGSVSDY V +A CPVL+VK
Sbjct: 88 VLGSRGLGKIKRAFLGSVSDYLVHHACCPVLVVK 121
>Os05g0157200 Universal stress protein (Usp) family protein
Length = 167
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 78/188 (41%), Gaps = 42/188 (22%)
Query: 8 ETAATGRRILVAVDEGDESVHALKWCLASFAKRXXXXXXXXXDTIILLYVRPPP------ 61
E AA R + AVD + S AL+W + + D +ILL+V P
Sbjct: 4 EAAAAERWVGAAVDFSEGSRAALRWAADNLLR--------AGDHLILLHVLKDPDYEQGE 55
Query: 62 ---------PTYSVLDASGYVFSDEVAAAIDGYSKEVAEAVVEKAQKLCTLYGKEVGGDG 112
P + D S + + A D + ++ V +
Sbjct: 56 TLLWEATGSPLIPLSDFSEPTIAKKYGAKPDAETLDMLNTVARQ---------------- 99
Query: 113 EAGHEMKVEVKVAVGDARNVICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNAN 172
E+ V KV GD R +CQ +++ LV+GS G G KR LLGSVSDY V NA
Sbjct: 100 ---KEVVVVFKVLWGDPREKLCQAINEIPMSCLVIGSRGLGKLKRVLLGSVSDYVVNNAT 156
Query: 173 CPVLIVKS 180
CPV +VK+
Sbjct: 157 CPVTVVKT 164
>Os10g0437500 Universal stress protein (Usp) family protein
Length = 181
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 15 RILVAVDEGDESVHALKWCLASFAKRXXXXXXXXXDTIILLYVRPPP---------PTYS 65
++LVAVD+ S AL W L + + RP P P +
Sbjct: 2 KVLVAVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQV---PRPAPELVLVHAIEPLHH 58
Query: 66 VL----DASGYVFSDEVAAAIDGYSKEVAEAVVEKAQKLCTLYGKEVGGDGEAGHEMKVE 121
V+ S + + A+ E A ++ +A+ +C G A + VE
Sbjct: 59 VMFPVGPGSAVYGAASMMEAVRAAQAENARNLLVRARLICERRGV-------AAATVAVE 111
Query: 122 VKVAVGDARNVICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVK 179
G+ R +C+ A+ GA +LV+GS G G KRA LGSVSDYC A+CP+++VK
Sbjct: 112 -----GEPREALCRAAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVK 164
>Os02g0707900 Universal stress protein (Usp) family protein
Length = 177
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 44/63 (69%)
Query: 117 EMKVEVKVAVGDARNVICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVL 176
E+K E + GD + VIC ++ D+LV+GS G G F+R +G+VS++CV++A+CPV+
Sbjct: 102 EIKCEAWIKQGDPKEVICSEVKRVQPDLLVVGSRGLGPFQRVFVGTVSEFCVKHADCPVI 161
Query: 177 IVK 179
+K
Sbjct: 162 TIK 164
>Os02g0773200 Universal stress protein (Usp) family protein
Length = 165
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 117 EMKVEVKVAVGDARNVICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVL 176
+++V KV GDAR +C+ D L + V+G G G KRALLGSVS+Y V NA CPV
Sbjct: 96 QVEVLAKVYWGDAREKLCEAVDDLKVNTFVLGCRGLGPLKRALLGSVSNYVVNNATCPVT 155
Query: 177 IVKS 180
+V++
Sbjct: 156 VVRA 159
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,191,884
Number of extensions: 241625
Number of successful extensions: 896
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 18
Length of query: 180
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 86
Effective length of database: 12,127,685
Effective search space: 1042980910
Effective search space used: 1042980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)