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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0437500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Universal stress protein (Usp) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.43 (0.0649) R2 : 0.602
β1 : -0.459 (0.283) R2dD : 0.00448 R2D : 0.0414
β2 : 1.62 (0.158) R2dC : 0.0885 R2C : 0.118
β3 : 3.82 (0.2) R2dE : 0.378 R2E : 0.33
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.6 (1.04) R2dD*E : 0.137 R2D*E : 0.0781
γ1 : -0.36 (0.135) R2dN8 : 0.0151 R2N8 : 0.013
σ : 1.14
deviance : 596.33
__
_____
C
peak time of C : 19.1
E
wheather : temperature
threshold : 29.6
memory length : 1130
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.27
open length of G : 11.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
599.44 1.15 4.56 -1.14 0.963 4.35 -11.4 -12.2 -0.994 7.46 29.81 729 9.98 10
697.13 1.23 4.7 -2.75 0.538 2.81 -5.29 -- -1.03 2.77 31.9 528 11.3 10.4
596.33 1.14 4.43 -0.459 1.62 3.82 -- -10.6 -0.36 19.1 29.6 1130 9.27 11.5
727.25 1.26 4.69 -2.54 0.546 4.25 -- -- -0.988 3.23 32.68 2034 11.3 9.92
728.45 1.26 4.43 -0.459 -- 3.82 -- -10 -0.36 -- 29.6 1130 9.27 11.5
828.95 1.35 4.76 -3.24 2.33 -- -3.57 -- -1 22.4 -- -- -- --
877.82 1.39 4.76 -3.09 2.38 -- -- -- -0.988 22 -- -- -- --
716.84 1.25 4.79 -2.36 -- 4.06 -- -- -1.42 -- 31.8 2061 12.4 8.83
869.65 1.37 4.77 -- 1.22 4.42 -- -- -1.18 2.26 31.81 2059 9.85 10.2
1218.54 1.63 4.69 -3.06 -- -- -- -- -0.986 -- -- -- -- --
1129.52 1.57 4.68 -- 2.37 -- -- -- -0.644 22 -- -- -- --
878.39 1.38 4.74 -- -- 4.39 -- -- -1.18 -- 31.69 2072 12.3 8.73
1465.54 1.79 4.62 -- -- -- -- -- -0.646 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 602.52 temperature 30 720 < th dose independent rect. 10 10
2 602.63 temperature 30 720 < th dose independent rect. 16 4
4 608.47 temperature 30 720 < th dose independent rect. 15 15
7 613.38 humidity 90 43200 < th dose independent rect. 19 9
9 613.87 temperature 30 720 < th dose independent rect. 8 14
10 613.94 radiation 40 14400 < th dose dependent rect. 18 3
11 614.02 humidity 90 43200 > th dose dependent rect. 23 1
12 614.06 humidity 90 43200 < th dose independent rect. 18 11
16 614.49 wind 7 43200 > th dose independent rect. 11 4
20 614.90 humidity 90 43200 < th dose independent rect. 21 6
23 615.05 wind 7 43200 < th dose independent rect. 12 2
26 615.27 humidity 90 43200 > th dose independent rect. 20 9
28 615.62 temperature 30 720 < th dose independent rect. 10 18
41 616.59 wind 7 43200 < th dose independent rect. 11 4
42 616.62 humidity 90 43200 > th dose dependent rect. 21 6
48 616.97 temperature 30 720 < th dose independent rect. 8 21
60 617.56 humidity 90 43200 < th dose independent rect. 23 2
62 617.63 wind 7 43200 > th dose dependent rect. 11 5
79 618.22 radiation 1 14400 < th dose dependent rect. 4 1
168 621.73 humidity 90 43200 > th dose independent rect. 23 1
175 622.14 radiation 10 43200 < th dose dependent rect. 20 9
181 622.32 humidity 90 43200 > th dose dependent rect. 14 15
191 622.53 humidity 90 43200 > th dose dependent rect. 2 1
204 622.79 wind 1 43200 < th dose dependent rect. 20 1
208 622.88 radiation 40 14400 < th dose dependent rect. 18 1
211 622.94 radiation 10 43200 < th dose independent rect. 18 13
229 623.33 humidity 90 43200 > th dose independent rect. 21 1
245 624.06 humidity 80 43200 > th dose independent rect. 12 1
251 624.40 radiation 1 43200 > th dose independent rect. 9 2
254 624.48 humidity 90 43200 < th dose independent sin 13 NA
257 624.53 radiation 1 43200 < th dose independent rect. 9 2
271 624.96 radiation 1 43200 > th dose dependent rect. 18 1
282 624.98 humidity 90 43200 < th dose independent rect. 10 1
285 625.02 radiation 10 43200 < th dose independent rect. 24 7
292 625.10 radiation 10 43200 < th dose independent rect. 4 3
311 625.37 radiation 1 43200 < th dose dependent rect. 9 1
317 625.49 radiation 1 43200 > th dose independent rect. 4 1
328 625.49 radiation 1 43200 > th dose dependent rect. 4 1
348 625.82 radiation 1 43200 < th dose independent rect. 4 1
356 625.92 humidity 90 43200 > th dose independent sin 13 NA
384 626.40 temperature 30 720 < th dose independent sin 16 NA
398 626.60 radiation 1 43200 < th dose dependent rect. 8 5
406 626.78 humidity 90 43200 > th dose dependent sin 13 NA
412 626.99 radiation 20 14400 > th dose dependent rect. 16 1
470 627.92 radiation 1 43200 < th dose dependent rect. 6 5
473 627.97 humidity 90 43200 > th dose independent rect. 10 1
617 631.32 temperature 30 720 < th dose independent sin 21 NA
646 632.07 temperature 25 720 > th dose dependent rect. 13 19
674 632.72 radiation 1 14400 < th dose dependent rect. 6 23
678 632.84 humidity 90 43200 < th dose independent rect. 21 1
686 632.98 temperature 20 43200 < th dose independent rect. 14 1
694 633.15 radiation 10 43200 < th dose independent rect. 18 8
696 633.19 radiation 1 14400 < th dose dependent rect. 6 17
698 633.20 radiation 10 43200 < th dose independent rect. 18 3
702 633.25 temperature 20 43200 > th dose independent rect. 14 1
708 633.36 radiation 10 43200 < th dose independent rect. 18 1
709 633.37 radiation 1 14400 < th dose dependent rect. 6 13
722 633.53 humidity 80 43200 < th dose independent rect. 12 1
723 633.54 temperature 25 4320 < th dose independent rect. 7 1
731 633.75 temperature 25 4320 < th dose independent rect. 7 3
753 634.12 temperature 25 720 > th dose dependent sin 15 NA
812 635.14 temperature 25 720 > th dose dependent rect. 13 11
819 635.26 temperature 25 4320 < th dose independent rect. 6 5
837 635.54 humidity 80 43200 > th dose dependent rect. 10 3
845 635.67 temperature 25 4320 > th dose independent rect. 7 3
846 635.67 radiation 1 1440 < th dose dependent rect. 18 5
849 635.69 radiation 1 1440 < th dose dependent rect. 18 3
857 635.83 temperature 25 4320 > th dose independent rect. 6 5
889 636.19 humidity 80 43200 > th dose dependent rect. 11 1
908 636.47 temperature 20 14400 > th dose independent rect. 4 1
911 636.50 temperature 25 1440 > th dose dependent rect. 15 21
963 637.10 temperature 25 1440 > th dose dependent rect. 15 23
966 637.13 temperature 20 14400 < th dose independent rect. 4 1
997 637.44 temperature 25 1440 > th dose dependent rect. 18 22