BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0437500 Os10g0437500|AK107152
(181 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0437500 Universal stress protein (Usp) family protein 315 1e-86
Os10g0435700 221 2e-58
Os07g0673400 Universal stress protein (Usp) family protein 116 7e-27
Os03g0750000 Universal stress protein (Usp) family protein 94 8e-20
Os12g0552500 Universal stress protein (Usp) family protein 93 9e-20
Os01g0511100 Universal stress protein (Usp) family protein 92 2e-19
Os02g0760500 Similar to ER6 protein (Fragment) 90 7e-19
Os12g0552400 Universal stress protein (Usp) family protein 86 1e-17
Os01g0303800 Universal stress protein (Usp) family protein 78 3e-15
AK103732 78 3e-15
Os05g0157200 Universal stress protein (Usp) family protein 74 5e-14
Os03g0305400 Universal stress protein (Usp) family protein 66 1e-11
Os05g0355400 Universal stress protein (Usp) family protein 65 3e-11
>Os10g0437500 Universal stress protein (Usp) family protein
Length = 181
Score = 315 bits (807), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 161/181 (88%), Positives = 161/181 (88%)
Query: 1 MKVLVAVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQVPRPAPELVLVHAIEPLHHVM 60
MKVLVAVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQVPRPAPELVLVHAIEPLHHVM
Sbjct: 1 MKVLVAVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQVPRPAPELVLVHAIEPLHHVM 60
Query: 61 FPVGPGSAVYGAASMMEAVRAAQAENARNLLVRARLICERRGXXXXXXXXEGEPREALCR 120
FPVGPGSAVYGAASMMEAVRAAQAENARNLLVRARLICERRG EGEPREALCR
Sbjct: 61 FPVGPGSAVYGAASMMEAVRAAQAENARNLLVRARLICERRGVAAATVAVEGEPREALCR 120
Query: 121 AAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVKXXXXXXXXXXXXHCTS 180
AAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVK HCTS
Sbjct: 121 AAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVKPPPDAGDEDDGGHCTS 180
Query: 181 N 181
N
Sbjct: 181 N 181
>Os10g0435700
Length = 255
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/162 (75%), Positives = 129/162 (79%), Gaps = 10/162 (6%)
Query: 1 MKVLVAVDDSRGSHRALS-WVLDHLFFPAAATGDGGEEEQVPRP-----APELVLVHAIE 54
MKVLVAVDD + A + W + ATGDGGEEEQVPRP APELVLVHA+E
Sbjct: 29 MKVLVAVDDRSTAVAATARWPGCSTTSSSPATGDGGEEEQVPRPDHEAAAPELVLVHAME 88
Query: 55 PLHHVMFPVGPG----SAVYGAASMMEAVRAAQAENARNLLVRARLICERRGXXXXXXXX 110
PLHHVMFPVGPG SAVYGAASMMEAVRAAQAENARNLLVRA+L+CERRG
Sbjct: 89 PLHHVMFPVGPGQSVRSAVYGAASMMEAVRAAQAENARNLLVRAKLVCERRGVAAATVAV 148
Query: 111 EGEPREALCRAAEDAGAGLLVVGSRGLGALKRAFLGSVSDYC 152
EGEPREALCRAAEDAGAGLLVVGSRGLGA+KRAFLGSVSDYC
Sbjct: 149 EGEPREALCRAAEDAGAGLLVVGSRGLGAIKRAFLGSVSDYC 190
>Os07g0673400 Universal stress protein (Usp) family protein
Length = 171
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 90/166 (54%), Gaps = 23/166 (13%)
Query: 3 VLVAVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQVPRPAPELVLVHAI-EPLHHVMF 61
V+V VDDS S+ AL W + HL + G GG ELV+VHA P V F
Sbjct: 13 VVVGVDDSEHSNYALEWTMQHL--ASGMAGSGG---------AELVIVHAKPSPSSVVGF 61
Query: 62 PVGPGSAVYGAASMMEAVRAAQAE---NARNLLVRARLICERRGXXXXXXXXEGEPREAL 118
GPGS E VR +A+ A +++ +AR +C EGEPR L
Sbjct: 62 GAGPGSG--------EVVRYVEADLRKTAEDVVEKARRLCIANAMHALIEVIEGEPRYVL 113
Query: 119 CRAAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVK 164
C A E AGLLVVGS G GA+KRAFLGSVSDYCAH A C +M+VK
Sbjct: 114 CNAVEKHSAGLLVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVK 159
>Os03g0750000 Universal stress protein (Usp) family protein
Length = 128
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 63/89 (70%)
Query: 76 MEAVRAAQAENARNLLVRARLICERRGXXXXXXXXEGEPREALCRAAEDAGAGLLVVGSR 135
+E++R AQ E +R ++ RA +C++R EG+ +EA+C+A E+ A +LV+GSR
Sbjct: 33 IESMRKAQEEISRKVVSRALDVCKQREVSATGAIVEGDAKEAICQAVEEMHADMLVLGSR 92
Query: 136 GLGALKRAFLGSVSDYCAHRASCPIMVVK 164
GLG +KRAFLGSVSDY H A CP++VVK
Sbjct: 93 GLGKIKRAFLGSVSDYLVHHACCPVLVVK 121
>Os12g0552500 Universal stress protein (Usp) family protein
Length = 169
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 87/164 (53%), Gaps = 16/164 (9%)
Query: 1 MKVLVAVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQVPRPAPELVLVHAIEPLHHVM 60
M ++V VD+S S+ AL W L H F AAA G P LV+V+A +
Sbjct: 16 MTMVVGVDESEHSYYALQWTLRHFF--AAAAGQP--------PQYRLVVVNAKPTAASAV 65
Query: 61 FPVGPGSAVYGAASMMEAVRAAQAENARNLLVRARLICERRGXXXXXXXXEGEPREALCR 120
GPG AA ++ V A +++ ++ +AR +C + EG+ R LC
Sbjct: 66 GLAGPG-----AADVLPFVEADLKKSSMRVIEKARELCAQVSDALFEVL-EGDARNVLCE 119
Query: 121 AAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVK 164
+ E A +LVVGS G GA+KRA LGSVSDYC+H A C +M+VK
Sbjct: 120 SVERHQAEMLVVGSHGYGAIKRAVLGSVSDYCSHHAHCTVMIVK 163
>Os01g0511100 Universal stress protein (Usp) family protein
Length = 167
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 29/172 (16%)
Query: 2 KVLVAVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQVPRPAPELVLVHAIEPLHHVMF 61
K +VAVD+S SH AL W L +L P AP L LV ++PL
Sbjct: 13 KAMVAVDESEFSHHALEWALRNL---------------APTIAPPL-LVLTVQPL----L 52
Query: 62 PVGPGSAV-YG--------AASMMEAVRAAQAENARNLLVRARLICERRGXXXXXXXXEG 112
P+G SA +G A +++A++ Q + ++ LL +A+ IC + G G
Sbjct: 53 PLGYVSAASFGSPLGTPVVAPELIKAMQEQQQQLSQALLDKAKQICAQHGVAVETMIKVG 112
Query: 113 EPREALCRAAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVK 164
+P+E +C+AAE++ LL+VGS G ++R FLGSVS+YC H + CP++VVK
Sbjct: 113 DPKEMICQAAEESKVDLLIVGSHSRGPVQRLFLGSVSNYCMHHSKCPVLVVK 164
>Os02g0760500 Similar to ER6 protein (Fragment)
Length = 162
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 22/168 (13%)
Query: 3 VLVAVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQVPRPAPELVLVHAIEPLHHVMFP 62
V+VAVD S S AL W LD+L RP LV++H ++P +
Sbjct: 9 VVVAVDGSEESMNALRWALDNLRL---------------RPDGALVVLH-VQPPPSIAAG 52
Query: 63 VGPGSAVYGAASMME------AVRAAQAENARNLLVRARLICERRGXXXXXXXXEGEPRE 116
+ PG +G S +E A+ A Q + +L A IC + G+P+E
Sbjct: 53 LNPGPIPFGGPSEVEVPAFTQAIEAHQRRITQAILDHALKICSEKNVEVKTDVVVGDPKE 112
Query: 117 ALCRAAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVK 164
+C + A LLV+G R G LKR FLGSVS+YC + CP++V+K
Sbjct: 113 KICEVTANLKADLLVMGCRAFGPLKRMFLGSVSNYCINNVVCPVVVIK 160
>Os12g0552400 Universal stress protein (Usp) family protein
Length = 160
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 3 VLVAVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQVPRPAPELVLVHAIEPLHHVMFP 62
+LV +DDS S+ AL W L H F G+ +Q LVL+ + P V+
Sbjct: 9 MLVGIDDSDHSYYALEWTLKHFFAL-------GQPQQY-----HLVLLTSKPPASAVI-- 54
Query: 63 VGPGSAVYGAASMMEAVRAAQAENARNLLVRARLICERRGXXXXXXXXEGEPREALCRAA 122
G A G ++ + A ++ +A+ +C + EG+ R LC A
Sbjct: 55 ---GIAGLGTTELLPTLELDLKRGAARVIEKAKEMCSQV-IDASYEVLEGDARNILCEAV 110
Query: 123 EDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVK 164
E A +LVVGS G GA KRA LGSVSDYC+H A C +M+VK
Sbjct: 111 ERHHADMLVVGSHGYGAWKRAVLGSVSDYCSHHAHCTVMIVK 152
>Os01g0303800 Universal stress protein (Usp) family protein
Length = 182
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 17/164 (10%)
Query: 2 KVLVAVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQVPRPAPELVLVHAIEPLHHVMF 61
+++VAVD+S S AL+W L ++ + GG+ LVL+HA P ++
Sbjct: 32 RIVVAVDESEESTHALTWCLANVV-----SSSGGDT---------LVLLHARRP--RPVY 75
Query: 62 PVGPGSAVYGAASMMEAVRAAQAENARNLLVRARLICERRGXXXXXXXXE-GEPREALCR 120
S + +M ++ A + + +A+ IC E G+PR+ +C
Sbjct: 76 AAMDSSGYMMTSDVMASMDKYAAAVSAAAVGKAKHICAAFPHVTVETMVESGDPRDVICD 135
Query: 121 AAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVK 164
A E A LLV+G+ G G ++RAFLGSVS++CA CP+++VK
Sbjct: 136 ATEKMAADLLVMGTHGYGLIQRAFLGSVSNHCAQNCKCPVLIVK 179
>AK103732
Length = 182
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 17/164 (10%)
Query: 2 KVLVAVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQVPRPAPELVLVHAIEPLHHVMF 61
+++VAVD+S S AL+W L ++ + GG+ LVL+HA P ++
Sbjct: 32 RIVVAVDESEESTHALTWCLANVV-----SSSGGDT---------LVLLHARRP--RPVY 75
Query: 62 PVGPGSAVYGAASMMEAVRAAQAENARNLLVRARLICERRGXXXXXXXXE-GEPREALCR 120
S + +M ++ A + + +A+ IC E G+PR+ +C
Sbjct: 76 AAMDSSGYMMTSDVMASMDKYAAAVSAAAVGKAKHICAAFPHVTVETMVESGDPRDVICD 135
Query: 121 AAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVK 164
A E A LLV+G+ G G ++RAFLGSVS++CA CP+++VK
Sbjct: 136 ATEKMAADLLVMGTHGYGLIQRAFLGSVSNHCAQNCKCPVLIVK 179
>Os05g0157200 Universal stress protein (Usp) family protein
Length = 167
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 22/165 (13%)
Query: 6 AVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQVPRPAPELVLVHAIEPLHH----VMF 61
AVD S GS AL W D+L R L+L+H ++ + +
Sbjct: 15 AVDFSEGSRAALRWAADNLL----------------RAGDHLILLHVLKDPDYEQGETLL 58
Query: 62 PVGPGSAVYGAASMMEAVRAAQ--AENARNLLVRARLICERRGXXXXXXXXEGEPREALC 119
GS + + E A + A+ L + ++ G+PRE LC
Sbjct: 59 WEATGSPLIPLSDFSEPTIAKKYGAKPDAETLDMLNTVARQKEVVVVFKVLWGDPREKLC 118
Query: 120 RAAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVK 164
+A + LV+GSRGLG LKR LGSVSDY + A+CP+ VVK
Sbjct: 119 QAINEIPMSCLVIGSRGLGKLKRVLLGSVSDYVVNNATCPVTVVK 163
>Os03g0305400 Universal stress protein (Usp) family protein
Length = 180
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 112 GEPREALCRAAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVK 164
G+ R +C+ A+ GA +LV+GS G G KRA LGSVSDYC A+CP+++VK
Sbjct: 127 GDARNVICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVK 179
>Os05g0355400 Universal stress protein (Usp) family protein
Length = 96
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 111 EGEPREALCRAAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVK 164
+G+PR+ +C A E AGA ++V+GS G G L+R LGSVS++C CP++VVK
Sbjct: 34 KGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTLLGSVSNHCVQHCKCPVVVVK 87
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,073,955
Number of extensions: 266914
Number of successful extensions: 777
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 768
Number of HSP's successfully gapped: 13
Length of query: 181
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 86
Effective length of database: 12,075,471
Effective search space: 1038490506
Effective search space used: 1038490506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)