Os12g0552500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Universal stress protein (Usp) family protein.
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Os12g0552500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Universal stress protein (Usp) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.96 | 0.428 | 13.2 | 0.708 | 1.47 | -1.11 | 0.669 | 0.278 | 0.554 | 21.8 | 10.22 | 1426 | -- | -- |
| 83.12 | 0.425 | 13.2 | 0.69 | 1.46 | -1.11 | 0.687 | -- | 0.556 | 21.8 | 10.22 | 1424 | -- | -- |
| 84.66 | 0.429 | 13.2 | 0.696 | 1.47 | -1.11 | -- | 0.357 | 0.557 | 21.8 | 10.21 | 1424 | -- | -- |
| 84.86 | 0.429 | 13.2 | 0.64 | 1.47 | -1.09 | -- | -- | 0.54 | 21.8 | 10.22 | 1428 | -- | -- |
| 173.13 | 0.616 | 13.3 | 0.361 | -- | -0.809 | -- | 0.00931 | 0.183 | -- | 10.21 | 1424 | -- | -- |
| 118.38 | 0.51 | 13.3 | 0.314 | 1.42 | -- | 0.517 | -- | 0.211 | 21.7 | -- | -- | -- | -- |
| 119.38 | 0.512 | 13.3 | 0.294 | 1.42 | -- | -- | -- | 0.21 | 21.6 | -- | -- | -- | -- |
| 172.68 | 0.615 | 13.3 | 0.361 | -- | -0.813 | -- | -- | 0.182 | -- | 10.04 | 3121 | -- | -- |
| 94.66 | 0.453 | 13.3 | -- | 1.49 | -0.955 | -- | -- | 0.42 | 21.9 | 10.47 | 1416 | -- | -- |
| 238.7 | 0.722 | 13.3 | 0.306 | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
| 121.67 | 0.516 | 13.3 | -- | 1.42 | -- | -- | -- | 0.177 | 21.7 | -- | -- | -- | -- |
| 149.71 | 0.572 | 13.3 | -- | -- | -0.903 | -- | -- | 0.221 | -- | 2.334 | 3104 | -- | -- |
| 241.18 | 0.725 | 13.3 | -- | -- | -- | -- | -- | 0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.14 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 2 | 82.44 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 4 | 82.59 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 12 | 83.26 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 24 | 83.27 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 96 | 83.57 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 97 | 83.58 | radiation | 10 | 1440 | > th | dose independent | sin | 3 | NA |
| 117 | 83.80 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 120 | 83.90 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 121 | 83.91 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 126 | 83.98 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 128 | 84.02 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 130 | 84.03 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 134 | 84.09 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 21 |
| 136 | 84.11 | temperature | 30 | 14400 | > th | dose dependent | sin | 14 | NA |
| 141 | 84.13 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 294 | 84.33 | temperature | 30 | 14400 | < th | dose independent | rect. | 9 | 10 |
| 359 | 84.35 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 361 | 84.35 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 440 | 84.35 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 22 |
| 443 | 84.35 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 456 | 84.35 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 596 | 84.38 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 597 | 84.38 | temperature | 30 | 14400 | < th | dose independent | sin | 0 | NA |
| 702 | 84.40 | temperature | 30 | 14400 | < th | dose independent | sin | 11 | NA |
| 708 | 84.41 | temperature | 30 | 14400 | > th | dose independent | sin | 23 | NA |
| 713 | 84.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 844 | 84.45 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 855 | 84.46 | temperature | 30 | 14400 | > th | dose independent | sin | 11 | NA |
| 862 | 84.47 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 863 | 84.47 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 866 | 84.47 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 871 | 84.48 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 875 | 84.48 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 876 | 84.48 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 933 | 84.50 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 14 |
| 935 | 84.51 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 3 |