BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0552500 Os12g0552500|AK066459
(169 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G47710.1 | chr2:19555045-19555956 REVERSE LENGTH=163 207 1e-54
AT3G11930.3 | chr3:3776371-3777393 FORWARD LENGTH=227 105 2e-23
AT5G49050.1 | chr5:19883929-19884381 FORWARD LENGTH=151 103 4e-23
AT3G58450.1 | chr3:21622032-21623057 FORWARD LENGTH=205 98 2e-21
AT1G09740.1 | chr1:3154603-3155834 FORWARD LENGTH=172 97 4e-21
AT1G68300.1 | chr1:25598518-25599261 REVERSE LENGTH=161 87 3e-18
AT3G62550.1 | chr3:23136194-23137074 FORWARD LENGTH=163 87 3e-18
AT1G11360.1 | chr1:3822171-3822899 REVERSE LENGTH=243 69 1e-12
AT3G01520.1 | chr3:208506-209921 FORWARD LENGTH=176 59 1e-09
AT5G14680.1 | chr5:4731620-4733025 REVERSE LENGTH=176 55 2e-08
AT3G53990.1 | chr3:19989658-19991019 REVERSE LENGTH=161 50 6e-07
AT2G21620.2 | chr2:9248749-9249986 FORWARD LENGTH=194 49 2e-06
AT3G17020.1 | chr3:5802728-5804063 REVERSE LENGTH=164 47 6e-06
AT4G27320.1 | chr4:13678860-13680717 REVERSE LENGTH=261 46 9e-06
>AT2G47710.1 | chr2:19555045-19555956 REVERSE LENGTH=163
Length = 162
Score = 207 bits (528), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 125/157 (79%), Gaps = 3/157 (1%)
Query: 14 GRMTMVVGVDESEHSYYALQWTLRHFFAAAAGQPPQYRLVVVNAKPTAASAVGLAGPGAA 73
G+ MVVGVD+SE S YAL+WTL FFA A P ++L +V+AKP A SAVGLAGPG A
Sbjct: 6 GKSVMVVGVDDSEQSTYALEWTLDRFFAPYAPNYP-FKLFIVHAKPNAVSAVGLAGPGTA 64
Query: 74 DVLPFVEADLKKSSMRVIEKARELCAQ--VSDALFEVLEGDARNVLCESVERHQAEMLVV 131
+V+P+V+ADLK ++ +V+EKA+ +C V A+ EV EGDARN+LCE V++H A +LVV
Sbjct: 65 EVVPYVDADLKHTAAKVVEKAKAICQSRSVHGAVIEVFEGDARNILCEVVDKHHASILVV 124
Query: 132 GSHGYGAIKRAVLGSVSDYCSHHAHCTVMIVKKPKHK 168
GSHGYGAIKRAVLGS SDYC+HHAHC+VMIVKKPK K
Sbjct: 125 GSHGYGAIKRAVLGSTSDYCAHHAHCSVMIVKKPKIK 161
>AT3G11930.3 | chr3:3776371-3777393 FORWARD LENGTH=227
Length = 226
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 41/190 (21%)
Query: 18 MVVGVDESEHSYYALQWTLRHF----FAAAAGQPPQYRLVVVNAK-PTAASAVGLAGPGA 72
MVV +DES+ S+YALQW + HF AA + L V++ + P A AGPG
Sbjct: 35 MVVAIDESDSSFYALQWVIDHFSNLLLTTAAAEAESGMLTVIHVQSPFNHFAAFPAGPGG 94
Query: 73 A-------DVLPFVEADLKKSSMRVIEKARELC--AQVSDALFEVLEGDARNVLCESVER 123
A ++ V+ +++S ++ +A ++C Q+ VLEG+A+ ++CE+VE+
Sbjct: 95 ATAVYASSSMIESVKKAQQETSAALLSRALQMCRAKQIRTETL-VLEGEAKEMICEAVEK 153
Query: 124 HQAEMLVVGSHGYGAIKR--------------------------AVLGSVSDYCSHHAHC 157
++LVVGS G G IKR A LGSVSDYC+HHA+C
Sbjct: 154 MHVDLLVVGSRGLGKIKRYCIINNFFLYINLSAYYFVCFVRFGRAFLGSVSDYCAHHANC 213
Query: 158 TVMIVKKPKH 167
++IVK PK
Sbjct: 214 PILIVKPPKE 223
>AT5G49050.1 | chr5:19883929-19884381 FORWARD LENGTH=151
Length = 150
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
Query: 18 MVVGVDESEHSYYALQWTLRHFFAAAAGQPPQYRLVVVNAKPTAASAVGLAGPGAADVLP 77
+VVGVD+S HSY+AL+ L FF P +++LVV++A+PTA +G+AGPG D++P
Sbjct: 41 VVVGVDDSAHSYHALETALDLFFIPFKANP-RFKLVVLHARPTATFFLGVAGPGTVDIIP 99
Query: 78 FVEADLKKSSMRVIEKARELCA--QVSDALFEVLEGDARNVLCESVERHQA 126
VE DL K++ V +K E+C+ V + EV+EGD RN++ E+VERH A
Sbjct: 100 MVEEDLNKTADLVKKKCAEVCSAKSVEISSLEVIEGDPRNIMLEAVERHHA 150
>AT3G58450.1 | chr3:21622032-21623057 FORWARD LENGTH=205
Length = 204
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 94/162 (58%), Gaps = 13/162 (8%)
Query: 18 MVVGVDESEHSYYALQWTLRHFFAAAAGQPPQYR----LVVVNAKPTAASAVGLAGPGAA 73
++V +DES++S+ AL+W + H + +P + L +++ PT + +G A+
Sbjct: 32 VMVAIDESKNSFDALEWAVDHLRVVISAEPETGQEGGLLTLLHVHPTYLQYIYPSGGTAS 91
Query: 74 DVL-------PFVEADLKKSSMRVIEKARELC-AQVSDALFEVLEGDARNVLCESVERHQ 125
V P +A ++S+ + +A E+C ++ +LEGD + ++C++VE+
Sbjct: 92 AVYATDSVPEPMRKAR-EESTTNLFTRALEICRGKMVKTETMILEGDPKEMICQAVEQTH 150
Query: 126 AEMLVVGSHGYGAIKRAVLGSVSDYCSHHAHCTVMIVKKPKH 167
++LVVGS G G IKRA LGSVSDYC+ HA C ++IV+ P+
Sbjct: 151 VDLLVVGSRGLGMIKRAFLGSVSDYCAQHAKCPILIVRPPRE 192
>AT1G09740.1 | chr1:3154603-3155834 FORWARD LENGTH=172
Length = 171
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 10/158 (6%)
Query: 18 MVVGVDESEHSYYALQWTLRHFFAAAAGQPPQYRLVVVNAKPTAASAVG-----LAGPGA 72
+VV VD SE S AL+W L + +++ + ++ V P+ A+ V GP
Sbjct: 10 VVVAVDGSEVSMEALRWALDNLKLSSSSSDSSFVVLHVQPSPSVAAGVSPGTIPFGGPSG 69
Query: 73 ADVLPF---VEADLKKSSMRVIEKARELCAQVS-DALFEVLEGDARNVLCESVERHQAEM 128
+V F +E K+ + ++E A ++CA+ S + +V+ GD + +CE+VE A++
Sbjct: 70 LEVPAFTAAIEQHQKRITDTILEHASQICAEKSVNVKTQVVIGDPKYKICEAVENLHADL 129
Query: 129 LVVGSHGYGAIKRAVLGSVSDYCSHHAHCTVMIVKKPK 166
LV+GS YG IKR LGSVS+YC++HAHC V+I+ KPK
Sbjct: 130 LVMGSRAYGRIKRMFLGSVSNYCTNHAHCPVVII-KPK 166
>AT1G68300.1 | chr1:25598518-25599261 REVERSE LENGTH=161
Length = 160
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 90/150 (60%), Gaps = 8/150 (5%)
Query: 18 MVVGVDESEHSYYALQWTLRHFFAAAAGQPPQYRLVVVNAKP-TAASAVGLAGPGAA--D 74
++V +DESE S ALQWTL + + A +++ A+P S V + GAA +
Sbjct: 12 VMVAIDESECSKRALQWTLVYLKDSLADSD----IILFTAQPHLDLSCVYASSYGAAPIE 67
Query: 75 VLPFVEADLKKSSMRVIEKARELCAQVSDALFEVLE-GDARNVLCESVERHQAEMLVVGS 133
++ ++ K + + +++ ++CA+ +VLE G+ + +CE+ E+ +MLVVGS
Sbjct: 68 LINSLQESHKNAGLNRLDEGTKICAETGVTPRKVLEFGNPKEAICEAAEKLGVDMLVVGS 127
Query: 134 HGYGAIKRAVLGSVSDYCSHHAHCTVMIVK 163
HG GA++R LGSVS+YC ++A C V++V+
Sbjct: 128 HGKGALQRTFLGSVSNYCVNNAKCPVLVVR 157
>AT3G62550.1 | chr3:23136194-23137074 FORWARD LENGTH=163
Length = 162
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 86/160 (53%), Gaps = 24/160 (15%)
Query: 18 MVVGVDESEHSYYALQWTLRHFFAAAAGQPPQYRLVVVNAKP--------TAASAVGLAG 69
+VV VDESE S AL W+L + F + L+++ KP AA +
Sbjct: 9 IVVAVDESEESMEALSWSLDNLFPYGSNNT----LILLYVKPPLPVYSSLDAAGFIVTGD 64
Query: 70 PGAADVLPFVEADLKKSSM---RVIEKARELCAQVSDALFE--VLEGDARNVLCESVERH 124
P AA L E +L +S M R + + E SD E V GDA+ V+C +V++
Sbjct: 65 PVAA--LKKYEYELVESVMARSRTVYQDYE-----SDINIERRVGRGDAKEVICNAVQKL 117
Query: 125 QAEMLVVGSHGYGAIKRAVLGSVSDYCSHHAHCTVMIVKK 164
+ +MLV+G+H YG KRA+LGSVS+YC+ C V+IVKK
Sbjct: 118 RVDMLVMGTHDYGFFKRALLGSVSEYCAKRVKCPVVIVKK 157
>AT1G11360.1 | chr1:3822171-3822899 REVERSE LENGTH=243
Length = 242
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 20 VGVDESEHSYYALQWTLRHFFAAAAGQPPQYRLVVVNAKPTAASAVGLAGPGAADVLPFV 79
+ VD S+ S YA+QW ++++ + +V+++ +PT S + A GA D+ P
Sbjct: 42 IAVDLSDESAYAVQWAVQNYLRSGDA------VVLLHVQPT--SVLYGADWGAMDLSPQW 93
Query: 80 EADLKKSSMRVIEK----ARELCAQVSDALFE---------VLEGDARNVLCESVERHQA 126
+ + ++S ++ + + + V+ L E V + D + LC VER
Sbjct: 94 DPNNEESQRKLEDDFDIVTNKKASDVAQPLVEADIPFKIHIVKDHDMKERLCLEVERLGL 153
Query: 127 EMLVVGSHGYGAIKRAV---LGSVSDYCSHHAHCTVMIVKKPKHK 168
L++GS G+GA KR+ LGSVSDY HH C V++V+ P K
Sbjct: 154 STLIMGSRGFGATKRSSKGRLGSVSDYSVHHCACPVVVVRFPDDK 198
>AT3G01520.1 | chr3:208506-209921 FORWARD LENGTH=176
Length = 175
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 111 GDARNVLCESVERHQAEMLVVGSHGYGAIKRAVLGSVSDYCSHHAHCTVMIVKK 164
GD ++V+C+ V+R + + LVVGS G G ++ +G+VS +C HA C VM +K+
Sbjct: 110 GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKR 163
>AT5G14680.1 | chr5:4731620-4733025 REVERSE LENGTH=176
Length = 175
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 108 VLEGDARNVLCESVERHQAEMLVVGSHGYGAIKRAVLGSVSDYCSHHAHCTVMIVKK 164
+ +GD ++C V R + + LVVGS G G ++ +G+VS++C HA C V+ +K+
Sbjct: 107 IRKGDPTELICHEVRRVRPDFLVVGSRGLGPFQKVFVGTVSEFCVKHAECPVITIKR 163
>AT3G53990.1 | chr3:19989658-19991019 REVERSE LENGTH=161
Length = 160
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 111 GDARNVLCESVERHQAEMLVVGSHGYGAIKRAVLGSVSDYCSHHAHCTVMIVK 163
GDAR L ++V+ + + +V+GS G A++R ++GSVS + HA C V +VK
Sbjct: 105 GDAREKLVDAVKDLKLDSIVMGSRGLSALQRIIMGSVSSFVIQHAPCPVTVVK 157
>AT2G21620.2 | chr2:9248749-9249986 FORWARD LENGTH=194
Length = 193
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 21/148 (14%)
Query: 18 MVVGVDESEHSYYALQWTLRHFFAAAAGQPPQYRLVVVNAKPTAASAVGLAGPGAADVLP 77
++V VD +S +A W L HF A L +V+A ++ S L
Sbjct: 42 VIVAVDHGPNSKHAFDWALVHFCRLAD------TLHLVHAVSSSFS------------LQ 83
Query: 78 FVEADL-KKSSMRVIEKARELCAQVS--DALFEVLEGDARNVLCESVERHQAEMLVVGSH 134
V+ D+ ++S ++EK QV+ ++ V+EGDA V+C+ E+ + ++VG+
Sbjct: 84 CVKNDVVYETSQALMEKLAVEAYQVAMVKSVARVVEGDAGKVICKEAEKVKPAAVIVGTR 143
Query: 135 GYGAIKRAVLGSVSDYCSHHAHCTVMIV 162
G ++ + GSVS+YC H+ +I+
Sbjct: 144 GRSLVRSVLQGSVSEYCFHNCKSAPVII 171
>AT3G17020.1 | chr3:5802728-5804063 REVERSE LENGTH=164
Length = 163
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 105 LFEVLEGDARNVLCESVERHQAEMLVVGSHGYGAIKRAVLGSVSDYCSHHAHCTVMIVK 163
+ ++ GD R +C + E+ LV+G+ G G +KR ++GSVS++ ++ C V +VK
Sbjct: 102 VMKIYWGDPREKICAAAEQIPLSSLVMGNRGLGGLKRMIMGSVSNHVVNNVACPVTVVK 160
>AT4G27320.1 | chr4:13678860-13680717 REVERSE LENGTH=261
Length = 260
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 65/159 (40%), Gaps = 34/159 (21%)
Query: 15 RMTMVVGVDESEHSYYALQWTLRHFFAAAAGQPPQYRLVVVNAKPTA------------- 61
R + V VD SE S +A++W + H+ P +V+++ PT+
Sbjct: 44 RRKIGVAVDLSEESAFAVRWAVDHYIR------PGDAVVILHVSPTSVLFGADWGPLPLQ 97
Query: 62 --ASAVGLAGPGAADVLPFVEADLKKSSMRVIEKARELCAQVSDALFE-----VLEGDAR 114
PGA + D SS K +L + +A F V + D R
Sbjct: 98 TPPPPSAATDPGAQPKPSQEDFDAFTSS-----KVADLAKPLKEAGFPHKIHIVKDHDMR 152
Query: 115 NVLCESVERHQAEMLVVGSHGYGAIKRAV---LGSVSDY 150
LC ER +++GS G+GA KR LGSVSDY
Sbjct: 153 ERLCLETERLNLSAVIMGSRGFGAEKRGSDGKLGSVSDY 191
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,194,879
Number of extensions: 107079
Number of successful extensions: 365
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 15
Length of query: 169
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 78
Effective length of database: 8,611,713
Effective search space: 671713614
Effective search space used: 671713614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)