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Os07g0673400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Universal stress protein (Usp) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0367) R2 : 0.715
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.47 (0.0909) R2dC : 0.493 R2C : 0.606
β3 : 3.18 (0.249) R2dE : 0.109 R2E : 0.221
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0823 (0.0771) R2dN8 : 0.000926 R2N8 : -0.00252
σ : 0.687
deviance : 217.61
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C
peak time of C : 22.6
E
wheather : humidity
threshold : 62.14
memory length : 15
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.9
open length of G : 1.34

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
201.94 0.668 11.5 -0.187 2.46 3.03 -1.46 3.95 0.0536 22.7 61.47 11 18.9 1.07
212.83 0.679 11.5 -0.145 2.46 3.21 -1.06 -- 0.0707 22.7 61.97 13 18.9 1.29
210.18 0.675 11.5 -0.124 2.46 3.06 -- 3.24 0.0586 22.6 61.94 13 18.9 1.23
217.35 0.687 11.5 -0.1 2.46 3.17 -- -- 0.0643 22.6 62.33 13 18.9 1.27
542.74 1.09 11.4 -0.0116 -- 4.23 -- 3.23 -0.00823 -- 53.93 18 18.8 2.03
287.56 0.795 11.5 -0.118 2.78 -- -0.846 -- 0.0139 22.2 -- -- -- --
290.4 0.798 11.5 -0.0837 2.79 -- -- -- 0.0166 22.2 -- -- -- --
528.37 1.07 11.4 -0.137 -- 3.3 -- -- -0.104 -- 48.71 14 18.4 3.47
217.61 0.687 11.5 -- 2.47 3.18 -- -- 0.0823 22.6 62.14 15 18.9 1.34
762.35 1.29 11.4 -0.0439 -- -- -- -- 0.0221 -- -- -- -- --
290.58 0.797 11.5 -- 2.79 -- -- -- 0.0259 22.2 -- -- -- --
400.8 0.932 11.5 -- -- 3.04 -- -- -0.157 -- 51.22 26 17.8 6.03
762.4 1.29 11.4 -- -- -- -- -- 0.027 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 203.93 humidity 60.0 10 > th dose dependent rect. 19 1
13 210.95 humidity 70.0 10 > th dose independent rect. 19 1
14 211.03 radiation 40.0 720 < th dose dependent rect. 15 5
22 214.41 temperature 30.0 10 < th dose dependent rect. 18 2
25 214.86 temperature 30.0 90 < th dose independent rect. 18 2
27 214.95 radiation 10.0 720 < th dose independent rect. 15 5
28 215.39 temperature 10.0 1440 > th dose independent rect. 20 1
31 215.39 temperature 30.0 1440 < th dose independent rect. 20 1
35 215.39 humidity 50.0 1440 > th dose independent rect. 20 1
41 215.39 atmosphere 995.0 1440 > th dose independent rect. 20 1
45 215.39 radiation 1.0 1440 < th dose independent rect. 20 1
65 215.39 temperature 10.0 1440 > th dose independent rect. 21 23
68 215.39 radiation 1.0 1440 < th dose dependent rect. 20 1
81 216.02 radiation 1.0 90 < th dose dependent rect. 6 14
110 218.90 precipitation 0.1 90 < th dose independent rect. 20 23
111 218.90 precipitation 0.1 90 < th dose dependent rect. 20 23
116 219.33 radiation 1.0 90 < th dose dependent rect. 17 3
119 219.82 radiation 10.0 720 < th dose independent rect. 15 12
129 220.56 radiation 20.0 720 < th dose dependent rect. 15 12
139 221.02 radiation 1.0 90 < th dose independent rect. 6 14
146 221.27 radiation 1.0 90 < th dose independent rect. 5 23
168 222.53 radiation 10.0 90 < th dose dependent rect. 6 23
177 222.90 radiation 1.0 90 < th dose independent rect. 17 3
179 223.08 radiation 1.0 90 > th dose independent rect. 7 23
183 223.44 temperature 10.0 30 > th dose independent rect. 19 1
188 223.44 atmosphere 995.0 30 > th dose independent rect. 19 1
189 223.44 atmosphere 1010.0 30 < th dose independent rect. 19 1
191 223.44 radiation 1.0 30 < th dose independent rect. 19 1
196 223.44 temperature 10.0 30 > th dose independent rect. 20 23
203 223.50 wind 9.0 30 < th dose independent rect. 19 1
205 223.54 atmosphere 995.0 30 > th dose dependent rect. 19 1
206 223.59 wind 9.0 30 < th dose independent rect. 20 23
208 223.62 wind 1.0 30 > th dose independent rect. 19 1
241 224.20 radiation 1.0 90 < th dose independent rect. 9 11
255 224.51 radiation 10.0 720 < th dose dependent rect. 9 19
256 224.53 wind 9.0 90 < th dose dependent rect. 19 1
261 224.79 radiation 10.0 720 < th dose dependent rect. 11 9
263 224.99 radiation 10.0 720 < th dose dependent rect. 11 17
265 225.08 temperature 30.0 720 < th dose independent rect. 17 3
270 225.13 radiation 1.0 30 < th dose dependent rect. 17 23
271 225.17 radiation 1.0 30 < th dose dependent no NA NA
272 225.17 radiation 1.0 30 < th dose dependent rect. 11 21
278 225.17 radiation 1.0 30 < th dose dependent rect. 13 23
279 225.17 radiation 1.0 30 < th dose dependent rect. 15 23
292 225.61 radiation 1.0 30 < th dose dependent rect. 13 19
333 226.60 humidity 50.0 720 > th dose dependent rect. 17 3
338 226.86 humidity 50.0 90 > th dose dependent rect. 9 11
341 227.01 radiation 1.0 30 < th dose independent rect. 17 23
345 227.04 radiation 1.0 30 > th dose independent no NA NA
346 227.04 radiation 1.0 30 > th dose independent rect. 5 14
401 227.07 radiation 1.0 30 < th dose independent no NA NA
402 227.07 radiation 1.0 30 < th dose independent rect. 11 21
408 227.07 radiation 1.0 30 < th dose independent rect. 13 23
409 227.07 radiation 1.0 30 < th dose independent rect. 15 23
411 227.12 radiation 1.0 30 < th dose dependent rect. 15 21
429 227.51 radiation 1.0 30 < th dose independent rect. 13 19
439 227.54 radiation 1.0 30 < th dose dependent rect. 15 17
549 228.78 radiation 10.0 720 < th dose independent rect. 11 17
560 229.04 radiation 1.0 30 < th dose independent rect. 15 21
591 229.30 humidity 70.0 720 > th dose independent rect. 16 4
598 229.46 radiation 1.0 30 < th dose independent rect. 15 17
607 229.50 radiation 1.0 30 < th dose dependent rect. 15 15
618 229.61 temperature 30.0 720 < th dose independent rect. 17 11
628 229.81 radiation 20.0 1440 < th dose dependent rect. 11 22
690 230.41 radiation 10.0 720 < th dose dependent rect. 22 22
693 230.45 humidity 70.0 1440 > th dose independent rect. 17 21
719 230.90 humidity 70.0 720 > th dose independent rect. 16 12
728 231.01 radiation 10.0 1440 > th dose independent rect. 16 22
737 231.13 radiation 1.0 30 < th dose independent rect. 11 18
750 231.15 precipitation 0.1 30 < th dose independent rect. 19 1
751 231.15 precipitation 0.1 30 < th dose dependent rect. 19 1
757 231.23 radiation 10.0 720 > th dose independent rect. 11 21
762 231.30 radiation 20.0 1440 < th dose dependent rect. 8 23
763 231.34 radiation 20.0 1440 < th dose independent rect. 11 22
764 231.34 radiation 10.0 1440 > th dose independent rect. 11 23
765 231.34 humidity 60.0 90 > th dose dependent rect. 11 9
773 231.38 radiation 20.0 1440 < th dose dependent sin 22 NA
788 231.45 radiation 20.0 720 < th dose dependent sin 14 NA
805 231.55 radiation 1.0 30 < th dose independent rect. 13 16
901 231.77 radiation 20.0 1440 < th dose dependent rect. 19 23
903 231.78 radiation 20.0 1440 < th dose dependent rect. 3 18
926 231.82 radiation 20.0 1440 < th dose dependent rect. 3 15
957 231.88 radiation 20.0 1440 < th dose dependent no NA NA
1000 231.97 radiation 10.0 720 < th dose independent sin 15 NA