BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0673400 Os07g0673400|AK064061
(171 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0673400 Universal stress protein (Usp) family protein 345 1e-95
Os12g0552500 Universal stress protein (Usp) family protein 189 1e-48
Os12g0552400 Universal stress protein (Usp) family protein 166 8e-42
Os10g0437500 Universal stress protein (Usp) family protein 122 1e-28
Os01g0303800 Universal stress protein (Usp) family protein 108 2e-24
AK103732 108 2e-24
Os02g0760500 Similar to ER6 protein (Fragment) 97 5e-21
Os01g0511100 Universal stress protein (Usp) family protein 96 2e-20
Os03g0305400 Universal stress protein (Usp) family protein 95 3e-20
Os10g0435700 84 7e-17
Os03g0750000 Universal stress protein (Usp) family protein 77 5e-15
Os05g0355400 Universal stress protein (Usp) family protein 73 1e-13
>Os07g0673400 Universal stress protein (Usp) family protein
Length = 171
Score = 345 bits (884), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MAAAEGEQGKTVVVVGVDDSEHSNYALEWTMQHLASGMAGSGGAELVIVHAKPSPSSVVG 60
MAAAEGEQGKTVVVVGVDDSEHSNYALEWTMQHLASGMAGSGGAELVIVHAKPSPSSVVG
Sbjct: 1 MAAAEGEQGKTVVVVGVDDSEHSNYALEWTMQHLASGMAGSGGAELVIVHAKPSPSSVVG 60
Query: 61 FGAGPGSGEVVRYVEADLRKTAEDVVEKARRLCIANAMHALIEVIEGEPRYVLCNAVEKH 120
FGAGPGSGEVVRYVEADLRKTAEDVVEKARRLCIANAMHALIEVIEGEPRYVLCNAVEKH
Sbjct: 61 FGAGPGSGEVVRYVEADLRKTAEDVVEKARRLCIANAMHALIEVIEGEPRYVLCNAVEKH 120
Query: 121 SAGLLVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVKQPKAKRSRAETA 171
SAGLLVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVKQPKAKRSRAETA
Sbjct: 121 SAGLLVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVKQPKAKRSRAETA 171
>Os12g0552500 Universal stress protein (Usp) family protein
Length = 169
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/157 (60%), Positives = 122/157 (77%), Gaps = 3/157 (1%)
Query: 9 GKTVVVVGVDDSEHSNYALEWTMQHLASGMAGSGGA-ELVIVHAKPSPSSVVGFGAGPGS 67
G+ +VVGVD+SEHS YAL+WT++H + AG LV+V+AKP+ +S VG AGPG+
Sbjct: 14 GRMTMVVGVDESEHSYYALQWTLRHFFAAAAGQPPQYRLVVVNAKPTAASAVGL-AGPGA 72
Query: 68 GEVVRYVEADLRKTAEDVVEKARRLCIANAMHALIEVIEGEPRYVLCNAVEKHSAGLLVV 127
+V+ +VEADL+K++ V+EKAR LC A AL EV+EG+ R VLC +VE+H A +LVV
Sbjct: 73 ADVLPFVEADLKKSSMRVIEKARELC-AQVSDALFEVLEGDARNVLCESVERHQAEMLVV 131
Query: 128 GSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVKQPKAK 164
GSHGYGAIKRA LGSVSDYC+HHAHC+VMIVK+PK K
Sbjct: 132 GSHGYGAIKRAVLGSVSDYCSHHAHCTVMIVKKPKHK 168
>Os12g0552400 Universal stress protein (Usp) family protein
Length = 160
Score = 166 bits (420), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 115/154 (74%), Gaps = 3/154 (1%)
Query: 9 GKTVVVVGVDDSEHSNYALEWTMQHLASGMAGSGGAELVIVHAKPSPSSVVGFGAGPGSG 68
GK V++VG+DDS+HS YALEWT++H + + LV++ +KP S+V+G AG G+
Sbjct: 5 GKPVMLVGIDDSDHSYYALEWTLKHFFA-LGQPQQYHLVLLTSKPPASAVIGI-AGLGTT 62
Query: 69 EVVRYVEADLRKTAEDVVEKARRLCIANAMHALIEVIEGEPRYVLCNAVEKHSAGLLVVG 128
E++ +E DL++ A V+EKA+ +C + + A EV+EG+ R +LC AVE+H A +LVVG
Sbjct: 63 ELLPTLELDLKRGAARVIEKAKEMC-SQVIDASYEVLEGDARNILCEAVERHHADMLVVG 121
Query: 129 SHGYGAIKRAFLGSVSDYCAHHAHCSVMIVKQPK 162
SHGYGA KRA LGSVSDYC+HHAHC+VMIVK+PK
Sbjct: 122 SHGYGAWKRAVLGSVSDYCSHHAHCTVMIVKRPK 155
>Os10g0437500 Universal stress protein (Usp) family protein
Length = 181
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 94/169 (55%), Gaps = 23/169 (13%)
Query: 13 VVVGVDDSEHSNYALEWTMQHL--ASGMAGSGG---------AELVIVHAKPSPSSVVGF 61
V+V VDDS S+ AL W + HL + G GG ELV+VHA P V F
Sbjct: 3 VLVAVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQVPRPAPELVLVHAI-EPLHHVMF 61
Query: 62 GAGPGSG--------EVVRYVEADLRKTAEDVVEKARRLCIANAMHALIEVIEGEPRYVL 113
GPGS E VR +A+ A +++ +AR +C + A +EGEPR L
Sbjct: 62 PVGPGSAVYGAASMMEAVRAAQAE---NARNLLVRARLICERRGVAAATVAVEGEPREAL 118
Query: 114 CNAVEKHSAGLLVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVKQPK 162
C A E AGLLVVGS G GA+KRAFLGSVSDYCAH A C +M+VK P
Sbjct: 119 CRAAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVKPPP 167
>Os01g0303800 Universal stress protein (Usp) family protein
Length = 182
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 16/158 (10%)
Query: 13 VVVGVDDSEHSNYALEWTMQHLASGMAGSGGAELVIVHAK-PSPSSVVGFGAGPGSG--- 68
+VV VD+SE S +AL W LA+ ++ SGG LV++HA+ P P + A SG
Sbjct: 33 IVVAVDESEESTHALTWC---LANVVSSSGGDTLVLLHARRPRPV----YAAMDSSGYMM 85
Query: 69 --EVVRYVEADLRKTAEDVVEKARRLCIANAMHALIEVI--EGEPRYVLCNAVEKHSAGL 124
+V+ ++ + V KA+ +C A H +E + G+PR V+C+A EK +A L
Sbjct: 86 TSDVMASMDKYAAAVSAAAVGKAKHICAAFP-HVTVETMVESGDPRDVICDATEKMAADL 144
Query: 125 LVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVKQPK 162
LV+G+HGYG I+RAFLGSVS++CA + C V+IVK+PK
Sbjct: 145 LVMGTHGYGLIQRAFLGSVSNHCAQNCKCPVLIVKRPK 182
>AK103732
Length = 182
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 16/158 (10%)
Query: 13 VVVGVDDSEHSNYALEWTMQHLASGMAGSGGAELVIVHAK-PSPSSVVGFGAGPGSG--- 68
+VV VD+SE S +AL W LA+ ++ SGG LV++HA+ P P + A SG
Sbjct: 33 IVVAVDESEESTHALTWC---LANVVSSSGGDTLVLLHARRPRPV----YAAMDSSGYMM 85
Query: 69 --EVVRYVEADLRKTAEDVVEKARRLCIANAMHALIEVI--EGEPRYVLCNAVEKHSAGL 124
+V+ ++ + V KA+ +C A H +E + G+PR V+C+A EK +A L
Sbjct: 86 TSDVMASMDKYAAAVSAAAVGKAKHICAAFP-HVTVETMVESGDPRDVICDATEKMAADL 144
Query: 125 LVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVKQPK 162
LV+G+HGYG I+RAFLGSVS++CA + C V+IVK+PK
Sbjct: 145 LVMGTHGYGLIQRAFLGSVSNHCAQNCKCPVLIVKRPK 182
>Os02g0760500 Similar to ER6 protein (Fragment)
Length = 162
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 13/156 (8%)
Query: 13 VVVGVDDSEHSNYALEWTMQHLASGMAGSGGAELVIVHAKPSPSSVVGFGAGP----GSG 68
VVV VD SE S AL W + +L G+ LV++H +P PS G GP G
Sbjct: 9 VVVAVDGSEESMNALRWALDNLRLRPDGA----LVVLHVQPPPSIAAGLNPGPIPFGGPS 64
Query: 69 EV-----VRYVEADLRKTAEDVVEKARRLCIANAMHALIEVIEGEPRYVLCNAVEKHSAG 123
EV + +EA R+ + +++ A ++C + +V+ G+P+ +C A
Sbjct: 65 EVEVPAFTQAIEAHQRRITQAILDHALKICSEKNVEVKTDVVVGDPKEKICEVTANLKAD 124
Query: 124 LLVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVK 159
LLV+G +G +KR FLGSVS+YC ++ C V+++K
Sbjct: 125 LLVMGCRAFGPLKRMFLGSVSNYCINNVVCPVVVIK 160
>Os01g0511100 Universal stress protein (Usp) family protein
Length = 167
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 99/157 (63%), Gaps = 16/157 (10%)
Query: 14 VVGVDDSEHSNYALEWTMQHLASGMAGSGGAELVIVHAKPSPS----SVVGFGAGPGSG- 68
+V VD+SE S++ALEW +++LA +A L+++ +P S FG+ G+
Sbjct: 15 MVAVDESEFSHHALEWALRNLAPTIA----PPLLVLTVQPLLPLGYVSAASFGSPLGTPV 70
Query: 69 ---EVVRYVEADLRKTAEDVVEKARRLCIAN--AMHALIEVIEGEPRYVLCNAVEKHSAG 123
E+++ ++ ++ ++ +++KA+++C + A+ +I+V G+P+ ++C A E+
Sbjct: 71 VAPELIKAMQEQQQQLSQALLDKAKQICAQHGVAVETMIKV--GDPKEMICQAAEESKVD 128
Query: 124 LLVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVKQ 160
LL+VGSH G ++R FLGSVS+YC HH+ C V++VK+
Sbjct: 129 LLIVGSHSRGPVQRLFLGSVSNYCMHHSKCPVLVVKK 165
>Os03g0305400 Universal stress protein (Usp) family protein
Length = 180
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 17/164 (10%)
Query: 13 VVVGVDDSEHSNYALEWTMQHLASGMAGSGGA---ELVIVHAKPSPS--SVVGFGAGPGS 67
++V VD+ + S +AL+W + A G G A +++++ +P P SV+ S
Sbjct: 16 ILVAVDEGDESVHALKWCLASFAKRGGGGGAAPPDTIILLYVRPPPPTYSVLDASGYVFS 75
Query: 68 GEVVRYVEADLRKTAEDVVEKARRLCI------------ANAMHALIEVIEGEPRYVLCN 115
EV ++ ++ AE VVEKA++LC + M ++V G+ R V+C
Sbjct: 76 DEVAAAIDGYSKEVAEAVVEKAQKLCTLYGKEVGGDGEAGHEMKVEVKVAVGDARNVICQ 135
Query: 116 AVEKHSAGLLVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVK 159
+K A +LV+GSHGYG KRA LGSVSDYC +A+C V+IVK
Sbjct: 136 MADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVLIVK 179
>Os10g0435700
Length = 255
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 64/115 (55%), Gaps = 16/115 (13%)
Query: 45 ELVIVHAKPSPSSVVGFGAGPGSG------------EVVRYVEADLRKTAEDVVEKARRL 92
ELV+VHA P V F GPG E VR +A+ A +++ +A+ +
Sbjct: 80 ELVLVHAM-EPLHHVMFPVGPGQSVRSAVYGAASMMEAVRAAQAE---NARNLLVRAKLV 135
Query: 93 CIANAMHALIEVIEGEPRYVLCNAVEKHSAGLLVVGSHGYGAIKRAFLGSVSDYC 147
C + A +EGEPR LC A E AGLLVVGS G GAIKRAFLGSVSDYC
Sbjct: 136 CERRGVAAATVAVEGEPREALCRAAEDAGAGLLVVGSRGLGAIKRAFLGSVSDYC 190
>Os03g0750000 Universal stress protein (Usp) family protein
Length = 128
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 78 LRKTAED----VVEKARRLCIANAMHALIEVIEGEPRYVLCNAVEKHSAGLLVVGSHGYG 133
+RK E+ VV +A +C + A ++EG+ + +C AVE+ A +LV+GS G G
Sbjct: 36 MRKAQEEISRKVVSRALDVCKQREVSATGAIVEGDAKEAICQAVEEMHADMLVLGSRGLG 95
Query: 134 AIKRAFLGSVSDYCAHHAHCSVMIVKQPKA 163
IKRAFLGSVSDY HHA C V++VK KA
Sbjct: 96 KIKRAFLGSVSDYLVHHACCPVLVVKPTKA 125
>Os05g0355400 Universal stress protein (Usp) family protein
Length = 96
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 106 EGEPRYVLCNAVEKHSAGLLVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVKQP 161
+G+PR V+C AVEK A ++V+GSHGYG ++R LGSVS++C H C V++VK+P
Sbjct: 34 KGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTLLGSVSNHCVQHCKCPVVVVKRP 89
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.130 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,501,128
Number of extensions: 299979
Number of successful extensions: 1123
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1115
Number of HSP's successfully gapped: 13
Length of query: 171
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 77
Effective length of database: 12,127,685
Effective search space: 933831745
Effective search space used: 933831745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)