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Os05g0355400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Universal stress protein (Usp) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0802) R2 : 0.758
β1 : 1.4 (0.299) R2dD : 0.0126 R2D : -0.0324
β2 : 6.29 (0.208) R2dC : 0.498 R2C : 0.506
β3 : 4.54 (0.326) R2dE : 0.11 R2E : 0.116
β4 : 6.61 (0.917) R2dD*C : 0.0296 R2D*C : 0.0162
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.44 (0.172) R2dN8 : 0.145 R2N8 : 0.0729
σ : 1.49
deviance : 1029.93
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C
peak time of C : 19.3
E
wheather : humidity
threshold : 61.13
memory length : 1321
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.93
open length of G : 4.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1021.64 1.5 11.3 1.24 6.32 4.57 6.56 2.23 2.43 19.3 61.49 1329 9.85 4
1029.93 1.49 11.3 1.4 6.29 4.54 6.61 -- 2.44 19.3 61.13 1321 9.93 4.05
1129.79 1.57 11.3 1.01 6.27 4.61 -- 3.75 2.41 19.2 61.74 1308 10.2 4
1150.82 1.58 11.3 1.31 6.28 4.6 -- -- 2.32 19.1 58.09 1302 10.3 3.98
1407.76 1.75 11.2 0.193 -- 7.78 -- 3.86 1.99 -- -25.1 2129 11.4 3.84
1469.15 1.8 11.4 0.61 6.6 -- 6.48 -- 2.19 19.4 -- -- -- --
1584.09 1.86 11.3 0.461 6.61 -- -- -- 2.2 19.4 -- -- -- --
1341.23 1.71 11.2 0.683 -- 9.75 -- -- 2.13 -- -17.56 1980 11.2 7.56
1167.76 1.59 11.3 -- 6.14 4.37 -- -- 2.04 19.1 60.11 1267 11.7 1.95
3913.92 2.92 11.2 0.356 -- -- -- -- 2.09 -- -- -- -- --
1589.69 1.87 11.4 -- 6.6 -- -- -- 2.15 19.4 -- -- -- --
1335.41 1.7 11.3 -- -- 10.1 -- -- 1.89 -- -18.31 1981 10.8 8.59
3917.27 2.92 11.2 -- -- -- -- -- 2.05 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1056.59 humidity 80 1440 < th dose independent rect. 7 7
4 1066.66 humidity 70 1440 > th dose independent rect. 18 20
5 1067.50 humidity 80 1440 > th dose independent rect. 7 7
19 1079.96 humidity 70 1440 < th dose independent rect. 18 20
35 1088.45 humidity 70 1440 > th dose independent rect. 9 4
36 1089.12 humidity 60 1440 > th dose dependent rect. 9 5
53 1094.79 humidity 90 1440 < th dose dependent rect. 5 9
57 1095.86 radiation 10 1440 > th dose independent rect. 17 20
62 1096.62 humidity 90 1440 < th dose dependent rect. 8 6
64 1097.11 radiation 10 1440 > th dose independent rect. 6 7
93 1098.07 humidity 70 1440 > th dose independent rect. 22 16
101 1099.10 humidity 70 1440 < th dose independent rect. 10 3
103 1099.66 humidity 60 1440 > th dose dependent rect. 11 2
110 1101.48 humidity 80 1440 < th dose dependent rect. 19 19
166 1106.55 radiation 10 1440 > th dose independent rect. 8 4
200 1108.10 humidity 80 1440 < th dose independent sin 3 NA
203 1108.75 humidity 80 1440 > th dose independent sin 3 NA
211 1109.57 radiation 10 1440 > th dose independent sin 6 NA
238 1110.64 humidity 90 1440 < th dose dependent sin 3 NA
240 1110.78 humidity 80 1440 < th dose dependent sin 5 NA
283 1112.57 humidity 70 1440 < th dose independent rect. 11 1
311 1114.75 humidity 70 1440 > th dose independent sin 9 NA
373 1117.50 humidity 70 1440 > th dose independent rect. 2 19
376 1117.55 humidity 70 1440 > th dose independent rect. 6 15
377 1117.56 humidity 70 1440 > th dose independent rect. 4 17
378 1117.57 humidity 70 1440 > th dose independent rect. 2 21
409 1117.76 humidity 70 1440 > th dose independent rect. 22 23
410 1117.77 humidity 70 1440 > th dose independent rect. 6 23
415 1117.80 humidity 70 1440 > th dose independent rect. 6 21
420 1117.82 humidity 70 1440 > th dose independent rect. 4 23
425 1117.84 humidity 70 1440 > th dose independent no NA NA
434 1117.89 humidity 70 1440 > th dose independent rect. 9 23
464 1118.62 radiation 20 1440 < th dose dependent rect. 16 22
485 1119.18 humidity 70 1440 < th dose independent rect. 9 23
495 1119.41 humidity 70 1440 < th dose independent no NA NA
496 1119.41 humidity 70 1440 < th dose independent rect. 6 14
598 1120.69 radiation 20 1440 < th dose dependent rect. 6 8
630 1122.63 humidity 50 1440 > th dose dependent sin 1 NA
653 1124.15 radiation 20 1440 < th dose dependent sin 2 NA
662 1124.91 radiation 20 1440 < th dose dependent rect. 6 12
671 1125.21 radiation 20 1440 < th dose dependent rect. 6 15
673 1125.29 radiation 20 1440 < th dose dependent rect. 6 17
686 1125.60 radiation 20 1440 < th dose dependent rect. 6 21
690 1125.73 radiation 20 1440 < th dose dependent rect. 11 23
695 1125.96 humidity 70 1440 < th dose independent sin 9 NA
700 1126.14 radiation 20 1440 < th dose dependent rect. 2 12
733 1126.75 radiation 20 1440 < th dose dependent rect. 22 16
797 1128.11 radiation 20 1440 < th dose dependent rect. 2 16
815 1128.38 radiation 20 1440 < th dose dependent rect. 19 23
816 1128.39 radiation 20 1440 < th dose dependent rect. 2 19
824 1128.47 radiation 20 1440 < th dose dependent rect. 2 21
829 1128.52 radiation 20 1440 < th dose dependent rect. 22 20
861 1128.73 radiation 20 1440 < th dose independent rect. 16 21
870 1128.80 radiation 20 1440 < th dose dependent rect. 22 23
883 1128.91 radiation 20 1440 < th dose dependent no NA NA