BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0355400 Os05g0355400|AK070138
(96 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G62550.1 | chr3:23136194-23137074 FORWARD LENGTH=163 85 8e-18
AT1G68300.1 | chr1:25598518-25599261 REVERSE LENGTH=161 81 1e-16
AT3G58450.1 | chr3:21622032-21623057 FORWARD LENGTH=205 80 2e-16
AT1G09740.1 | chr1:3154603-3155834 FORWARD LENGTH=172 75 7e-15
AT5G14680.1 | chr5:4731620-4733025 REVERSE LENGTH=176 67 2e-12
AT3G01520.1 | chr3:208506-209921 FORWARD LENGTH=176 67 2e-12
AT2G47710.1 | chr2:19555045-19555956 REVERSE LENGTH=163 66 4e-12
AT3G17020.1 | chr3:5802728-5804063 REVERSE LENGTH=164 63 3e-11
AT3G11930.3 | chr3:3776371-3777393 FORWARD LENGTH=227 60 2e-10
AT3G53990.1 | chr3:19989658-19991019 REVERSE LENGTH=161 60 3e-10
AT1G11360.1 | chr1:3822171-3822899 REVERSE LENGTH=243 58 1e-09
AT2G21620.2 | chr2:9248749-9249986 FORWARD LENGTH=194 47 1e-06
>AT3G62550.1 | chr3:23136194-23137074 FORWARD LENGTH=163
Length = 162
Score = 84.7 bits (208), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 49/67 (73%)
Query: 26 VKVETRVEKGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTLLGSVSNHCVQHCKCPVVV 85
+ +E RV +GD ++VIC AV+K DM+VMG+H YGF +R LLGSVS +C + KCPVV+
Sbjct: 95 INIERRVGRGDAKEVICNAVQKLRVDMLVMGTHDYGFFKRALLGSVSEYCAKRVKCPVVI 154
Query: 86 VKRPGTN 92
VK+ +
Sbjct: 155 VKKQAQD 161
>AT1G68300.1 | chr1:25598518-25599261 REVERSE LENGTH=161
Length = 160
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 45/56 (80%)
Query: 32 VEKGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTLLGSVSNHCVQHCKCPVVVVK 87
+E G+P++ IC A EK G DM+V+GSHG G LQRT LGSVSN+CV + KCPV+VV+
Sbjct: 102 LEFGNPKEAICEAAEKLGVDMLVVGSHGKGALQRTFLGSVSNYCVNNAKCPVLVVR 157
>AT3G58450.1 | chr3:21622032-21623057 FORWARD LENGTH=205
Length = 204
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%)
Query: 26 VKVETRVEKGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTLLGSVSNHCVQHCKCPVVV 85
VK ET + +GDP+++IC AVE+ D++V+GS G G ++R LGSVS++C QH KCP+++
Sbjct: 127 VKTETMILEGDPKEMICQAVEQTHVDLLVVGSRGLGMIKRAFLGSVSDYCAQHAKCPILI 186
Query: 86 VKRP 89
V+ P
Sbjct: 187 VRPP 190
>AT1G09740.1 | chr1:3154603-3155834 FORWARD LENGTH=172
Length = 171
Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Query: 14 RLTDHLVSSDVQ------VKVETRVEKGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTL 67
R+TD ++ Q V V+T+V GDP+ IC AVE AD++VMGS YG ++R
Sbjct: 85 RITDTILEHASQICAEKSVNVKTQVVIGDPKYKICEAVENLHADLLVMGSRAYGRIKRMF 144
Query: 68 LGSVSNHCVQHCKCPVVVVK 87
LGSVSN+C H CPVV++K
Sbjct: 145 LGSVSNYCTNHAHCPVVIIK 164
>AT5G14680.1 | chr5:4731620-4733025 REVERSE LENGTH=176
Length = 175
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 23 DVQVKVETRVEKGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTLLGSVSNHCVQHCKCP 82
D+ V E + KGDP ++IC V + D +V+GS G G Q+ +G+VS CV+H +CP
Sbjct: 98 DIGVGCEAWIRKGDPTELICHEVRRVRPDFLVVGSRGLGPFQKVFVGTVSEFCVKHAECP 157
Query: 83 VVVVKR 88
V+ +KR
Sbjct: 158 VITIKR 163
>AT3G01520.1 | chr3:208506-209921 FORWARD LENGTH=176
Length = 175
Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 23 DVQVKVETRVEKGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTLLGSVSNHCVQHCKCP 82
++ V E ++ GDP+DVIC V++ D +V+GS G G Q+ +G+VS CV+H +CP
Sbjct: 98 EIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECP 157
Query: 83 VVVVKR 88
V+ +KR
Sbjct: 158 VMTIKR 163
>AT2G47710.1 | chr2:19555045-19555956 REVERSE LENGTH=163
Length = 162
Score = 65.9 bits (159), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 43/59 (72%)
Query: 31 RVEKGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTLLGSVSNHCVQHCKCPVVVVKRP 89
V +GD R+++C V+K A ++V+GSHGYG ++R +LGS S++C H C V++VK+P
Sbjct: 100 EVFEGDARNILCEVVDKHHASILVVGSHGYGAIKRAVLGSTSDYCAHHAHCSVMIVKKP 158
>AT3G17020.1 | chr3:5802728-5804063 REVERSE LENGTH=164
Length = 163
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 26 VKVETRVEKGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTLLGSVSNHCVQHCKCPVVV 85
+ V ++ GDPR+ IC A E+ +VMG+ G G L+R ++GSVSNH V + CPV V
Sbjct: 99 ITVVMKIYWGDPREKICAAAEQIPLSSLVMGNRGLGGLKRMIMGSVSNHVVNNVACPVTV 158
Query: 86 VK 87
VK
Sbjct: 159 VK 160
>AT3G11930.3 | chr3:3776371-3777393 FORWARD LENGTH=227
Length = 226
Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 26/91 (28%)
Query: 25 QVKVETRVEKGDPRDVICGAVEKAGADMVVMGSHGYG-----------FLQ--------- 64
Q++ ET V +G+ +++IC AVEK D++V+GS G G FL
Sbjct: 131 QIRTETLVLEGEAKEMICEAVEKMHVDLLVVGSRGLGKIKRYCIINNFFLYINLSAYYFV 190
Query: 65 ------RTLLGSVSNHCVQHCKCPVVVVKRP 89
R LGSVS++C H CP+++VK P
Sbjct: 191 CFVRFGRAFLGSVSDYCAHHANCPILIVKPP 221
>AT3G53990.1 | chr3:19989658-19991019 REVERSE LENGTH=161
Length = 160
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 25 QVKVETRVEKGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTLLGSVSNHCVQHCKCPVV 84
+V V T++ GD R+ + AV+ D +VMGS G LQR ++GSVS+ +QH CPV
Sbjct: 95 EVHVVTKLYWGDAREKLVDAVKDLKLDSIVMGSRGLSALQRIIMGSVSSFVIQHAPCPVT 154
Query: 85 VVK 87
VVK
Sbjct: 155 VVK 157
>AT1G11360.1 | chr1:3822171-3822899 REVERSE LENGTH=243
Length = 242
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 19 LVSSDVQVKVETRVEKGDPRDVICGAVEKAGADMVVMGSHGYGFLQRT---LLGSVSNHC 75
LV +D+ K+ V+ D ++ +C VE+ G ++MGS G+G +R+ LGSVS++
Sbjct: 123 LVEADIPFKIHI-VKDHDMKERLCLEVERLGLSTLIMGSRGFGATKRSSKGRLGSVSDYS 181
Query: 76 VQHCKCPVVVVKRP 89
V HC CPVVVV+ P
Sbjct: 182 VHHCACPVVVVRFP 195
>AT2G21620.2 | chr2:9248749-9249986 FORWARD LENGTH=194
Length = 193
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 26 VKVETRVEKGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTLLGSVSNHCVQHCK-CPVV 84
VK RV +GD VIC EK V++G+ G ++ L GSVS +C +CK PV+
Sbjct: 111 VKSVARVVEGDAGKVICKEAEKVKPAAVIVGTRGRSLVRSVLQGSVSEYCFHNCKSAPVI 170
Query: 85 VVKRPGTNA 93
+V PG A
Sbjct: 171 IV--PGKEA 177
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,928,043
Number of extensions: 64814
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 14
Length of query: 96
Length of database: 11,106,569
Length adjustment: 66
Effective length of query: 30
Effective length of database: 9,297,113
Effective search space: 278913390
Effective search space used: 278913390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)