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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0552400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Universal stress protein (Usp) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0509) R2 : 0.00501
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.162 (0.107) R2dN8 : 0.00647 R2N8 : 0.00501
σ : 0.958
deviance : 420.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
398.25 0.938 3.21 -0.295 0.0716 0.434 -0.119 -0.513 0.0421 16.2 24.89 27 -- --
398.72 0.93 3.23 -0.423 0.0755 0.431 0.228 -- -0.00232 15.3 24.79 21 -- --
398.28 0.929 3.22 -0.306 0.0725 0.436 -- -0.477 0.0393 16.1 24.89 26 -- --
398.87 0.93 3.23 -0.423 0.0769 0.426 -- -- -0.00483 16 24.8 21 -- --
398.51 0.93 3.21 -0.31 -- 0.417 -- -0.479 0.0319 -- 24.9 26 -- --
410.57 0.95 3.28 -0.551 0.212 -- -0.0928 -- -0.228 2.23 -- -- -- --
410.61 0.949 3.28 -0.549 0.213 -- -- -- -0.227 2.3 -- -- -- --
399.11 0.93 3.23 -0.433 -- 0.396 -- -- -0.0221 -- 24.79 21 -- --
403.39 0.935 3.21 -- 0.114 0.475 -- -- 0.0652 15.6 24.76 20 -- --
413.29 0.95 3.28 -0.54 -- -- -- -- -0.222 -- -- -- -- --
418.55 0.957 3.26 -- 0.202 -- -- -- -0.166 2.25 -- -- -- --
403.93 0.936 3.22 -- -- 0.429 -- -- 0.0412 -- 24.78 20 -- --
420.98 0.958 3.26 -- -- -- -- -- -0.162 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 384.83 wind 1.0 90 < th dose independent rect. 2 1
2 385.05 humidity 80.0 10 < th dose independent rect. 5 1
7 385.05 humidity 80.0 10 < th dose dependent rect. 5 1
18 385.63 wind 3.0 10 > th dose dependent rect. 6 1
29 387.25 wind 1.0 90 < th dose dependent rect. 2 1
30 387.60 radiation 1.0 90 < th dose independent rect. 8 1
33 387.60 radiation 1.0 90 < th dose dependent rect. 8 1
37 388.46 wind 3.0 10 > th dose independent rect. 3 4
45 389.80 wind 1.0 90 < th dose independent rect. 23 4
47 390.05 precipitation 0.1 30 < th dose independent rect. 3 23
48 390.05 precipitation 0.1 30 < th dose dependent rect. 3 23
60 391.54 wind 1.0 10 < th dose independent rect. 2 2
62 391.67 wind 1.0 90 < th dose independent rect. 17 11
69 391.90 wind 3.0 10 > th dose dependent rect. 3 4
70 392.03 temperature 20.0 90 > th dose independent rect. 2 1
73 392.25 wind 1.0 90 < th dose independent rect. 12 16
77 392.36 temperature 20.0 90 > th dose dependent rect. 2 1
87 392.67 temperature 25.0 30 > th dose independent rect. 14 17
100 393.13 wind 1.0 90 < th dose dependent rect. 23 4
106 393.61 temperature 20.0 10 > th dose independent rect. 2 2
121 394.21 wind 1.0 90 < th dose independent rect. 8 20
125 394.48 humidity 80.0 90 > th dose independent rect. 2 1
126 394.51 humidity 90.0 30 > th dose dependent rect. 2 1
139 394.70 atmosphere 1000.0 30 > th dose independent rect. 2 1
146 394.76 atmosphere 995.0 30 > th dose dependent rect. 2 1
154 394.80 temperature 25.0 30 < th dose independent rect. 2 1
161 394.85 wind 9.0 30 < th dose independent rect. 2 1
162 394.85 temperature 10.0 30 > th dose independent rect. 2 1
165 394.85 humidity 50.0 30 > th dose independent rect. 2 1
169 394.85 atmosphere 1010.0 30 < th dose independent rect. 2 1
171 394.85 radiation 1.0 30 < th dose independent rect. 2 1
176 394.85 precipitation 0.1 30 < th dose independent rect. 2 1
177 394.85 temperature 10.0 30 > th dose independent rect. 3 23
180 394.85 radiation 1.0 30 < th dose dependent rect. 2 1
185 394.85 precipitation 0.1 30 < th dose dependent rect. 2 1
192 394.97 atmosphere 1015.0 30 < th dose independent rect. 3 23
197 395.03 atmosphere 1015.0 30 < th dose dependent rect. 2 1
200 395.06 temperature 30.0 30 < th dose dependent rect. 2 1
216 395.34 wind 1.0 30 > th dose independent rect. 2 1
245 395.50 wind 1.0 90 < th dose dependent rect. 17 10
252 395.64 temperature 10.0 30 > th dose dependent rect. 4 22
257 395.79 wind 9.0 30 < th dose independent rect. 3 23
260 395.91 radiation 1.0 43200 < th dose dependent rect. 3 1
261 395.94 radiation 1.0 1440 > th dose independent rect. 4 1
272 395.94 radiation 1.0 1440 > th dose dependent rect. 4 1
283 395.94 wind 1.0 90 < th dose dependent rect. 12 15
300 396.33 temperature 25.0 30 < th dose independent rect. 9 21
315 396.50 temperature 25.0 720 > th dose dependent rect. 14 1
319 396.57 atmosphere 995.0 30 > th dose independent rect. 3 23
322 396.61 humidity 80.0 1440 > th dose independent rect. 3 2
323 396.64 humidity 50.0 30 > th dose independent sin 11 NA
324 396.64 humidity 50.0 90 < th dose independent rect. 14 21
338 396.75 temperature 25.0 10 < th dose independent rect. 16 18
339 396.76 temperature 25.0 10 > th dose independent rect. 14 22
340 396.78 temperature 25.0 10 > th dose independent rect. 14 20
341 396.78 wind 7.0 43200 > th dose dependent rect. 16 1
347 396.86 humidity 80.0 270 < th dose dependent rect. 2 4
348 396.87 temperature 25.0 30 < th dose independent rect. 9 19
351 396.88 temperature 25.0 10 < th dose independent rect. 12 22
352 396.88 wind 9.0 43200 > th dose dependent rect. 13 8
353 396.91 wind 9.0 43200 > th dose independent rect. 13 8
354 396.91 humidity 50.0 90 < th dose dependent sin 11 NA
356 396.93 temperature 25.0 10 < th dose independent rect. 14 20
384 396.95 wind 7.0 43200 > th dose dependent rect. 14 4
386 396.97 humidity 50.0 30 < th dose independent sin 11 NA
388 396.98 temperature 25.0 30 < th dose independent rect. 15 13
390 396.98 temperature 25.0 10 < th dose independent rect. 16 15
397 397.03 humidity 80.0 4320 < th dose independent rect. 4 2
404 397.07 wind 1.0 720 > th dose independent rect. 14 9
424 397.19 temperature 25.0 10 < th dose independent rect. 14 17
432 397.24 humidity 50.0 90 < th dose dependent rect. 15 20
435 397.27 humidity 90.0 30 > th dose independent rect. 17 11
449 397.32 wind 9.0 43200 < th dose independent rect. 13 8
464 397.40 wind 9.0 1440 < th dose independent rect. 3 1
465 397.40 temperature 10.0 1440 > th dose independent rect. 3 1
468 397.40 temperature 30.0 1440 < th dose independent rect. 3 1
472 397.40 humidity 50.0 1440 > th dose independent rect. 3 1
481 397.40 atmosphere 995.0 1440 > th dose independent rect. 3 1
482 397.40 radiation 1.0 1440 < th dose independent rect. 3 1
503 397.40 temperature 10.0 1440 > th dose independent rect. 4 23
506 397.40 radiation 1.0 1440 < th dose dependent rect. 3 1
519 397.42 wind 1.0 90 > th dose independent sin 15 NA
520 397.42 wind 7.0 43200 < th dose independent rect. 17 1
527 397.43 wind 1.0 90 < th dose dependent rect. 8 20
544 397.47 wind 1.0 10 < th dose independent rect. 17 11
549 397.48 wind 7.0 43200 > th dose independent rect. 16 2
562 397.51 temperature 25.0 90 > th dose independent rect. 3 22
569 397.53 humidity 50.0 270 > th dose independent rect. 5 23
603 397.67 temperature 15.0 90 > th dose dependent rect. 14 11
608 397.69 temperature 25.0 90 > th dose independent rect. 14 11
612 397.71 humidity 50.0 30 < th dose independent rect. 15 1
621 397.75 humidity 50.0 30 < th dose independent rect. 15 3
649 397.80 radiation 1.0 90 < th dose independent rect. 5 23
669 397.85 humidity 50.0 30 < th dose dependent rect. 15 3
727 397.88 humidity 90.0 10 > th dose independent rect. 23 5
728 397.88 temperature 25.0 30 > th dose independent rect. 8 23
780 397.93 temperature 30.0 10 > th dose independent rect. 14 1
848 398.04 wind 5.0 4320 > th dose independent rect. 20 1
849 398.04 wind 5.0 4320 < th dose independent rect. 20 1
868 398.09 wind 1.0 10 < th dose independent rect. 14 2
873 398.09 wind 1.0 10 < th dose dependent rect. 14 2
877 398.11 temperature 30.0 10 > th dose independent rect. 13 3
899 398.20 radiation 1.0 4320 < th dose independent rect. 9 1
903 398.20 radiation 1.0 4320 < th dose dependent rect. 9 1
905 398.20 humidity 80.0 30 > th dose dependent rect. 12 16
934 398.25 radiation 1.0 90 < th dose independent rect. 8 20
940 398.29 temperature 25.0 720 > th dose independent rect. 21 18
973 398.35 humidity 60.0 30 > th dose dependent rect. 12 16
976 398.37 radiation 1.0 720 > th dose independent rect. 14 1
986 398.39 humidity 60.0 30 > th dose dependent rect. 9 19
991 398.41 radiation 10.0 1440 < th dose independent rect. 22 7