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Os01g0303800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Universal stress protein (Usp) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0634) R2 : 0.804
β1 : 1.49 (0.231) R2dD : 0.0161 R2D : 0.00204
β2 : 7.12 (0.187) R2dC : 0.868 R2C : 0.0769
β3 : 7.93 (0.24) R2dE : 0.638 R2E : -0.116
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.43 (0.893) R2dD*E : 0.0167 R2D*E : 0.0127
γ1 : 1.29 (0.135) R2dN8 : 0.0498 R2N8 : 0.0389
σ : 1.18
deviance : 642.61
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C
peak time of C : 20.2
E
wheather : humidity
threshold : 72
memory length : 714
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 12.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
646.52 1.19 10.1 1.4 7.01 7.75 -0.155 -5.59 1.22 20.2 71 717 15.9 12.1
699.47 1.23 10.1 1.35 6.99 7.85 0.16 -- 1.21 20.2 71 718 15.9 12.1
642.61 1.18 10.1 1.49 7.12 7.93 -- -5.43 1.29 20.2 72 714 15.9 12.1
692.65 1.23 10.1 1.36 7.34 7.96 -- -- 1.19 20.2 72.07 716 16.3 11.7
795.45 1.31 9.84 1.82 -- 8.11 -- -4.97 1.41 -- 53.98 1705 15.6 12.5
872.51 1.38 9.99 1.13 5.9 -- -1.77 -- 1.41 23.8 -- -- -- --
885.87 1.39 9.98 1.2 5.91 -- -- -- 1.42 23.8 -- -- -- --
773.41 1.3 9.97 1.38 -- 7.96 -- -- 0.942 -- 54 1705 15.6 12.6
739.08 1.27 10.2 -- 7.34 7.85 -- -- 1.03 20.2 72.16 718 16.4 11.7
3081.04 2.59 9.85 1.37 -- -- -- -- 1.49 -- -- -- -- --
923.73 1.42 10 -- 5.92 -- -- -- 1.28 23.8 -- -- -- --
827.57 1.34 10 -- -- 7.86 -- -- 0.803 -- 54 1701 15.6 12.6
3130.59 2.61 9.88 -- -- -- -- -- 1.34 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 655.70 humidity 70 720 > th dose independent rect. 16 12
8 670.02 radiation 10 720 < th dose dependent rect. 14 14
16 678.25 radiation 10 720 < th dose dependent rect. 11 17
19 679.74 radiation 10 720 < th dose independent rect. 14 14
27 681.95 humidity 70 1440 > th dose independent rect. 17 20
34 686.06 temperature 30 720 < th dose independent rect. 17 11
38 687.20 humidity 70 720 > th dose independent sin 15 NA
47 689.47 humidity 70 720 > th dose independent rect. 16 4
49 689.55 humidity 70 1440 < th dose independent rect. 17 20
52 689.86 radiation 40 720 < th dose dependent rect. 15 5
84 696.52 radiation 10 720 < th dose dependent sin 15 NA
85 696.70 humidity 70 720 > th dose independent rect. 11 17
120 700.77 humidity 50 720 > th dose dependent rect. 17 3
121 700.92 humidity 80 1440 < th dose dependent rect. 18 20
130 701.92 radiation 10 720 < th dose dependent rect. 14 7
135 702.23 radiation 10 720 < th dose independent rect. 15 6
148 703.39 humidity 80 1440 < th dose independent rect. 6 8
162 704.28 humidity 80 1440 < th dose dependent rect. 23 15
166 704.58 humidity 80 1440 < th dose dependent rect. 3 11
175 704.78 humidity 80 1440 < th dose dependent sin 5 NA
176 704.80 radiation 10 720 < th dose independent rect. 11 17
253 708.12 humidity 50 720 > th dose dependent rect. 16 12
257 708.28 humidity 70 1440 > th dose independent rect. 9 4
279 708.97 radiation 10 720 < th dose independent sin 15 NA
293 709.57 humidity 70 1440 > th dose independent rect. 9 23
310 710.22 humidity 80 1440 > th dose independent rect. 6 8
318 710.38 humidity 70 1440 > th dose independent rect. 2 19
319 710.38 humidity 70 1440 > th dose independent rect. 2 21
321 710.40 humidity 70 1440 > th dose independent rect. 4 17
327 710.42 humidity 70 1440 > th dose independent rect. 9 12
333 710.43 humidity 70 1440 > th dose independent rect. 9 14
345 710.49 radiation 10 1440 > th dose independent rect. 16 21
364 710.59 humidity 70 1440 > th dose independent rect. 22 23
367 710.61 humidity 70 1440 > th dose independent no NA NA
371 710.62 humidity 70 1440 > th dose independent rect. 6 23
399 710.78 humidity 70 1440 > th dose independent rect. 11 1
421 711.24 humidity 80 1440 < th dose dependent rect. 11 2
433 711.47 humidity 70 1440 < th dose independent rect. 11 1
435 711.58 humidity 70 1440 < th dose independent rect. 9 23
457 712.24 humidity 80 1440 < th dose dependent rect. 23 20
459 712.30 temperature 30 720 < th dose independent rect. 17 3
463 712.34 humidity 70 1440 < th dose independent rect. 9 11
493 712.61 humidity 70 1440 < th dose independent no NA NA
494 712.61 humidity 70 1440 < th dose independent rect. 6 14
597 713.16 humidity 70 1440 < th dose independent sin 10 NA
641 713.53 humidity 70 1440 < th dose independent rect. 10 3
648 713.58 humidity 80 1440 < th dose dependent rect. 6 23
649 713.59 humidity 80 1440 < th dose dependent no NA NA
652 713.59 humidity 80 1440 < th dose dependent rect. 3 23
715 714.13 radiation 1 90 > th dose independent rect. 7 23
736 714.65 radiation 20 1440 < th dose dependent rect. 11 1
740 714.71 humidity 70 1440 > th dose independent rect. 2 12
773 715.10 humidity 70 1440 > th dose independent rect. 22 16
830 715.95 humidity 70 1440 > th dose independent sin 0 NA
895 716.74 humidity 50 1440 > th dose dependent rect. 9 5
903 716.98 humidity 50 1440 > th dose dependent rect. 11 2
907 717.06 radiation 10 720 < th dose dependent rect. 11 10
922 717.30 radiation 1 720 < th dose independent rect. 9 19
923 717.32 humidity 80 1440 < th dose dependent rect. 11 23
939 717.64 humidity 70 1440 < th dose independent sin 23 NA
962 718.21 radiation 10 1440 > th dose independent rect. 11 23
966 718.33 radiation 10 1440 < th dose dependent sin 22 NA