BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0303800 Os01g0303800|AK060078
(182 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G62550.1 | chr3:23136194-23137074 FORWARD LENGTH=163 144 3e-35
AT1G68300.1 | chr1:25598518-25599261 REVERSE LENGTH=161 100 3e-22
AT3G58450.1 | chr3:21622032-21623057 FORWARD LENGTH=205 100 7e-22
AT1G09740.1 | chr1:3154603-3155834 FORWARD LENGTH=172 94 3e-20
AT3G11930.3 | chr3:3776371-3777393 FORWARD LENGTH=227 91 3e-19
AT2G47710.1 | chr2:19555045-19555956 REVERSE LENGTH=163 86 1e-17
AT3G17020.1 | chr3:5802728-5804063 REVERSE LENGTH=164 80 9e-16
AT5G14680.1 | chr5:4731620-4733025 REVERSE LENGTH=176 75 1e-14
AT3G01520.1 | chr3:208506-209921 FORWARD LENGTH=176 75 3e-14
AT1G11360.1 | chr1:3822171-3822899 REVERSE LENGTH=243 65 2e-11
AT3G53990.1 | chr3:19989658-19991019 REVERSE LENGTH=161 61 4e-10
AT2G21620.2 | chr2:9248749-9249986 FORWARD LENGTH=194 54 4e-08
>AT3G62550.1 | chr3:23136194-23137074 FORWARD LENGTH=163
Length = 162
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Query: 31 RRIVVAVDESEESTHALTWCLANVVSSSGGDTLVLLHARRPRPVYAAMDSSGYMMTSDVM 90
R+IVVAVDESEES AL+W L N+ +TL+LL+ + P PVY+++D++G+++T D +
Sbjct: 7 RKIVVAVDESEESMEALSWSLDNLFPYGSNNTLILLYVKPPLPVYSSLDAAGFIVTGDPV 66
Query: 91 ASMDKYXXXXXXXXXXXXXHICAAFP-HVTVETMVESGDPRDVICDATEKMAADLLVMGT 149
A++ KY + + + +E V GD ++VIC+A +K+ D+LVMGT
Sbjct: 67 AALKKYEYELVESVMARSRTVYQDYESDINIERRVGRGDAKEVICNAVQKLRVDMLVMGT 126
Query: 150 HGYGLIQRAFLGSVSNHCAQNCKCPVLIVKR 180
H YG +RA LGSVS +CA+ KCPV+IVK+
Sbjct: 127 HDYGFFKRALLGSVSEYCAKRVKCPVVIVKK 157
>AT1G68300.1 | chr1:25598518-25599261 REVERSE LENGTH=161
Length = 160
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 3/150 (2%)
Query: 31 RRIVVAVDESEESTHALTWCLANVVSSSGGDTLVLLHARRPRPVYAAMDSSGYMMTS-DV 89
++++VA+DESE S AL W L + S D+ ++L +P + + +S Y ++
Sbjct: 10 KQVMVAIDESECSKRALQWTLV-YLKDSLADSDIILFTAQPHLDLSCVYASSYGAAPIEL 68
Query: 90 MASMDKYXXXXXXXXXXXXXHICAAFPHVTVETMVESGDPRDVICDATEKMAADLLVMGT 149
+ S+ + ICA VT ++E G+P++ IC+A EK+ D+LV+G+
Sbjct: 69 INSLQESHKNAGLNRLDEGTKICAE-TGVTPRKVLEFGNPKEAICEAAEKLGVDMLVVGS 127
Query: 150 HGYGLIQRAFLGSVSNHCAQNCKCPVLIVK 179
HG G +QR FLGSVSN+C N KCPVL+V+
Sbjct: 128 HGKGALQRTFLGSVSNYCVNNAKCPVLVVR 157
>AT3G58450.1 | chr3:21622032-21623057 FORWARD LENGTH=205
Length = 204
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 84/164 (51%), Gaps = 18/164 (10%)
Query: 33 IVVAVDESEESTHALTWCL--------ANVVSSSGGDTLVLLHARRPRPVY------AAM 78
++VA+DES+ S AL W + A + G L LLH P Y +
Sbjct: 32 VMVAIDESKNSFDALEWAVDHLRVVISAEPETGQEGGLLTLLHVH---PTYLQYIYPSGG 88
Query: 79 DSSGYMMTSDVMASMDKYXXXXXXXXXXXXXHICAAFPHVTVETMVESGDPRDVICDATE 138
+S T V M K IC V ETM+ GDP+++IC A E
Sbjct: 89 TASAVYATDSVPEPMRKAREESTTNLFTRALEICRG-KMVKTETMILEGDPKEMICQAVE 147
Query: 139 KMAADLLVMGTHGYGLIQRAFLGSVSNHCAQNCKCPVLIVKRPK 182
+ DLLV+G+ G G+I+RAFLGSVS++CAQ+ KCP+LIV+ P+
Sbjct: 148 QTHVDLLVVGSRGLGMIKRAFLGSVSDYCAQHAKCPILIVRPPR 191
>AT1G09740.1 | chr1:3154603-3155834 FORWARD LENGTH=172
Length = 171
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 87/160 (54%), Gaps = 13/160 (8%)
Query: 33 IVVAVDESEESTHALTWCLANV--VSSSGGDTLVLLHARRPRPVYAAMDSSGY------- 83
+VVAVD SE S AL W L N+ SSS + V+LH + P P AA S G
Sbjct: 10 VVVAVDGSEVSMEALRWALDNLKLSSSSSDSSFVVLHVQ-PSPSVAAGVSPGTIPFGGPS 68
Query: 84 -MMTSDVMASMDKYXXXXXXXXXXXXXHICAAFPHVTVETMVESGDPRDVICDATEKMAA 142
+ A+++++ ICA V V+T V GDP+ IC+A E + A
Sbjct: 69 GLEVPAFTAAIEQHQKRITDTILEHASQICAE-KSVNVKTQVVIGDPKYKICEAVENLHA 127
Query: 143 DLLVMGTHGYGLIQRAFLGSVSNHCAQNCKCPVLIVKRPK 182
DLLVMG+ YG I+R FLGSVSN+C + CPV+I+K PK
Sbjct: 128 DLLVMGSRAYGRIKRMFLGSVSNYCTNHAHCPVVIIK-PK 166
>AT3G11930.3 | chr3:3776371-3777393 FORWARD LENGTH=227
Length = 226
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 40/191 (20%)
Query: 31 RRIVVAVDESEESTHALTWC--------LANVVSSSGGDTLVLLHARRPRPVYAAM---- 78
+R+VVA+DES+ S +AL W L + + L ++H + P +AA
Sbjct: 33 KRMVVAIDESDSSFYALQWVIDHFSNLLLTTAAAEAESGMLTVIHVQSPFNHFAAFPAGP 92
Query: 79 -DSSGYMMTSDVMASMDKYXXXXXXXXXXXXXHICAAFPHVTVETMVESGDPRDVICDAT 137
++ +S ++ S+ K +C A + ET+V G+ +++IC+A
Sbjct: 93 GGATAVYASSSMIESVKKAQQETSAALLSRALQMCRA-KQIRTETLVLEGEAKEMICEAV 151
Query: 138 EKMAADLLVMGTHGYGLIQ--------------------------RAFLGSVSNHCAQNC 171
EKM DLLV+G+ G G I+ RAFLGSVS++CA +
Sbjct: 152 EKMHVDLLVVGSRGLGKIKRYCIINNFFLYINLSAYYFVCFVRFGRAFLGSVSDYCAHHA 211
Query: 172 KCPVLIVKRPK 182
CP+LIVK PK
Sbjct: 212 NCPILIVKPPK 222
>AT2G47710.1 | chr2:19555045-19555956 REVERSE LENGTH=163
Length = 162
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 33 IVVAVDESEESTHALTWCLANVVSSSGGD---TLVLLHARRPRPVYA-AMDSSGYMMTSD 88
+VV VD+SE+ST+AL W L + + L ++HA+ P V A + G T++
Sbjct: 10 MVVGVDDSEQSTYALEWTLDRFFAPYAPNYPFKLFIVHAK-PNAVSAVGLAGPG---TAE 65
Query: 89 VMASMDKYXXXXXXXXXXXXXHICAAFPHVTVETMVESGDPRDVICDATEKMAADLLVMG 148
V+ +D IC + V GD R+++C+ +K A +LV+G
Sbjct: 66 VVPYVDADLKHTAAKVVEKAKAICQSRSVHGAVIEVFEGDARNILCEVVDKHHASILVVG 125
Query: 149 THGYGLIQRAFLGSVSNHCAQNCKCPVLIVKRPK 182
+HGYG I+RA LGS S++CA + C V+IVK+PK
Sbjct: 126 SHGYGAIKRAVLGSTSDYCAHHAHCSVMIVKKPK 159
>AT3G17020.1 | chr3:5802728-5804063 REVERSE LENGTH=164
Length = 163
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 30 GRRIVVAVDESEESTHALTWCLANVVSSSGGDTLVLL-------HARRPRPVYAAMDSSG 82
GRRI VAVD S+ S AL+W + NVV GD L+L+ + ++ + S
Sbjct: 6 GRRIGVAVDFSDCSKKALSWAIDNVVRD--GDHLILITIAHDMNYEEGEMQLWETVGSPF 63
Query: 83 YMMTSDVMASMDKYXXXXXXXXXXXXXHICAAFPHVTVETMVESGDPRDVICDATEKMAA 142
M+ A++ K + A +TV + GDPR+ IC A E++
Sbjct: 64 IPMSEFSDAAVMKKYALKPDAETLDIVNTAARKKTITVVMKIYWGDPREKICAAAEQIPL 123
Query: 143 DLLVMGTHGYGLIQRAFLGSVSNHCAQNCKCPVLIVK 179
LVMG G G ++R +GSVSNH N CPV +VK
Sbjct: 124 SSLVMGNRGLGGLKRMIMGSVSNHVVNNVACPVTVVK 160
>AT5G14680.1 | chr5:4731620-4733025 REVERSE LENGTH=176
Length = 175
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 24/165 (14%)
Query: 32 RIVVAVDESE---------ESTHALTWCLANVV-SSSGGDTLVLLHARRPRPVYAAMDSS 81
R++VAV+ES S A W L +V S++ G L+LLH + D
Sbjct: 7 RVMVAVNESTLKGYPHASISSKKAFEWTLKKIVRSNTSGFKLLLLHVQ-------VQDED 59
Query: 82 GYMMTSDVMASMDKYXXXXXXXXXXXXXHICAAFPH------VTVETMVESGDPRDVICD 135
G+ + AS D + H+ F V E + GDP ++IC
Sbjct: 60 GFDDMDSIYASPDDFRQMRERNKAKGL-HLLEFFVKKCHDIGVGCEAWIRKGDPTELICH 118
Query: 136 ATEKMAADLLVMGTHGYGLIQRAFLGSVSNHCAQNCKCPVLIVKR 180
++ D LV+G+ G G Q+ F+G+VS C ++ +CPV+ +KR
Sbjct: 119 EVRRVRPDFLVVGSRGLGPFQKVFVGTVSEFCVKHAECPVITIKR 163
>AT3G01520.1 | chr3:208506-209921 FORWARD LENGTH=176
Length = 175
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 15/143 (10%)
Query: 45 HALTWCLANVVSSSGGD-TLVLLHARRPRPVYAAMDSSGYMMTSDVMASMDKYXXXXXXX 103
A W L +V S+ D ++LLH + +D G+ + AS + +
Sbjct: 29 RAFEWTLEKIVRSNTSDFKILLLHVQ-------VVDEDGFDDVDSIYASPEDFRDMRQSN 81
Query: 104 XXXXXXHICAAFPH------VTVETMVESGDPRDVICDATEKMAADLLVMGTHGYGLIQR 157
H+ F + V E +++GDP+DVIC +++ D LV+G+ G G Q+
Sbjct: 82 KAKGL-HLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQK 140
Query: 158 AFLGSVSNHCAQNCKCPVLIVKR 180
F+G+VS C ++ +CPV+ +KR
Sbjct: 141 VFVGTVSAFCVKHAECPVMTIKR 163
>AT1G11360.1 | chr1:3822171-3822899 REVERSE LENGTH=243
Length = 242
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 13/161 (8%)
Query: 31 RRIVVAVDESEESTHALTWCLANVVSSSGGDTLVLLHARRPRPVYAA----MDSSGYMMT 86
R+I +AVD S+ES +A+ W + N + S GD +VLLH + +Y A MD S
Sbjct: 38 RKIGIAVDLSDESAYAVQWAVQNYLRS--GDAVVLLHVQPTSVLYGADWGAMDLSPQWDP 95
Query: 87 SDVMASM---DKYXXXXXXXXXXXXXHICAAFPHVTVETMVESGDPRDVICDATEKMAAD 143
++ + D + + A + +V+ D ++ +C E++
Sbjct: 96 NNEESQRKLEDDFDIVTNKKASDVAQPLVEADIPFKIH-IVKDHDMKERLCLEVERLGLS 154
Query: 144 LLVMGTHGYGLIQRAF---LGSVSNHCAQNCKCPVLIVKRP 181
L+MG+ G+G +R+ LGSVS++ +C CPV++V+ P
Sbjct: 155 TLIMGSRGFGATKRSSKGRLGSVSDYSVHHCACPVVVVRFP 195
>AT3G53990.1 | chr3:19989658-19991019 REVERSE LENGTH=161
Length = 160
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 31 RRIVVAVDESEESTHALTWCLANVVSSSGGDTLVLLHARRPRPVYAAMDSSGYMMTSDVM 90
R I +A+D SE S +AL W + N+ + GDT+ ++H P + +S + S ++
Sbjct: 5 RNIGIAMDFSESSKNALKWAIENL--ADKGDTIYIIHTL-PLSGDESRNSLWFKSGSPLI 61
Query: 91 --------ASMDKYXXXXXXXXXXXXXHICAAFPHVTVETMVESGDPRDVICDATEKMAA 142
M+KY + V V T + GD R+ + DA + +
Sbjct: 62 PLAEFREPEIMEKYGVKTDIACLDML-DTGSRQKEVHVVTKLYWGDAREKLVDAVKDLKL 120
Query: 143 DLLVMGTHGYGLIQRAFLGSVSNHCAQNCKCPVLIVK 179
D +VMG+ G +QR +GSVS+ Q+ CPV +VK
Sbjct: 121 DSIVMGSRGLSALQRIIMGSVSSFVIQHAPCPVTVVK 157
>AT2G21620.2 | chr2:9248749-9249986 FORWARD LENGTH=194
Length = 193
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 33 IVVAVDESEESTHALTWCLANVVSSSGGDTLVLLHARRPRPVYAAMDSSGYMMTSDVMAS 92
++VAVD S HA W L + + DTL L+HA + + TS +
Sbjct: 42 VIVAVDHGPNSKHAFDWALVHFCRLA--DTLHLVHAVSSSFSLQCVKNDVVYETSQAL-- 97
Query: 93 MDKYXXXXXXXXXXXXXHICAAFPHVTVETMVESGDPRDVICDATEKMAADLLVMGTHGY 152
M+K +V +VE GD VIC EK+ +++GT G
Sbjct: 98 MEKLAVEAYQVAMVK-----------SVARVVE-GDAGKVICKEAEKVKPAAVIVGTRGR 145
Query: 153 GLIQRAFLGSVSNHCAQNCK-CPVLIV 178
L++ GSVS +C NCK PV+IV
Sbjct: 146 SLVRSVLQGSVSEYCFHNCKSAPVIIV 172
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.132 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,129,690
Number of extensions: 100407
Number of successful extensions: 284
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 14
Length of query: 182
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 90
Effective length of database: 8,584,297
Effective search space: 772586730
Effective search space used: 772586730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)