Os01g0511100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Universal stress protein (Usp) family protein.
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Os01g0511100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Universal stress protein (Usp) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.26 | 0.41 | 11.6 | 0.939 | 1.48 | 2.12 | 0.67 | 1.61 | 0.192 | 22.6 | 30.27 | 3781 | -- | -- |
| 78.26 | 0.412 | 11.6 | 1.28 | 1.47 | 2.05 | 0.605 | -- | 0.241 | 22.6 | 40.38 | 3763 | -- | -- |
| 78.11 | 0.412 | 11.6 | 0.943 | 1.48 | 2.11 | -- | 1.47 | 0.188 | 22.6 | 30.38 | 3777 | -- | -- |
| 79.6 | 0.416 | 11.6 | 1.25 | 1.46 | 2.05 | -- | -- | 0.24 | 22.6 | 33 | 3755 | -- | -- |
| 155.39 | 0.584 | 11.5 | 0.791 | -- | 2.26 | -- | 0.586 | 0.225 | -- | 30.38 | 3777 | -- | -- |
| 150.3 | 0.575 | 11.6 | 0.393 | 1.32 | -- | 0.527 | -- | -0.155 | 22.4 | -- | -- | -- | -- |
| 151.44 | 0.576 | 11.6 | 0.371 | 1.32 | -- | -- | -- | -0.156 | 22.4 | -- | -- | -- | -- |
| 155.6 | 0.584 | 11.5 | 0.877 | -- | 2.66 | -- | -- | 0.203 | -- | 39.16 | 4498 | -- | -- |
| 104.9 | 0.48 | 11.6 | -- | 1.12 | 2.17 | -- | -- | 0.06 | 20.6 | 39.15 | 2328 | -- | -- |
| 257.75 | 0.75 | 11.6 | 0.394 | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
| 155.07 | 0.583 | 11.7 | -- | 1.32 | -- | -- | -- | -0.198 | 22.4 | -- | -- | -- | -- |
| 174.76 | 0.618 | 11.6 | -- | -- | 2.38 | -- | -- | 0.0743 | -- | 49.03 | 3027 | -- | -- |
| 261.83 | 0.755 | 11.6 | -- | -- | -- | -- | -- | -0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.14 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 2 | 71.25 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 4 | 71.66 | temperature | 30 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 5 | 71.67 | temperature | 10 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 18 | 72.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 19 | 72.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 39 | 72.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 56 | 72.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 57 | 72.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 118 | 72.56 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 130 | 72.61 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 133 | 72.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 12 |
| 134 | 72.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 136 | 72.64 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 141 | 72.65 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 11 |
| 189 | 72.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 229 | 72.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 374 | 73.10 | temperature | 10 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 380 | 73.11 | temperature | 30 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 413 | 73.16 | temperature | 10 | 43200 | > th | dose dependent | sin | 12 | NA |
| 415 | 73.16 | temperature | 30 | 43200 | < th | dose dependent | sin | 13 | NA |
| 416 | 73.16 | temperature | 25 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 437 | 73.19 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 446 | 73.20 | radiation | 1 | 43200 | < th | dose dependent | sin | 15 | NA |
| 779 | 73.52 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 800 | 73.55 | temperature | 10 | 4320 | > th | dose dependent | sin | 9 | NA |
| 802 | 73.55 | temperature | 30 | 4320 | < th | dose dependent | sin | 9 | NA |
| 988 | 73.73 | radiation | 1 | 43200 | < th | dose independent | sin | 15 | NA |