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Os05g0157200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Universal stress protein (Usp) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.5 (0.0178) R2 : 0.627
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.08 (0.0443) R2dC : 0.492 R2C : 0.443
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.494 (0.0374) R2dN8 : 0.184 R2N8 : 0.136
σ : 0.335
deviance : 51.39
__
_____
C
peak time of C : 21
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.2 0.283 14.6 0.709 1.1 -0.603 0.578 -0.00652 0.481 21.1 59.18 1567 -- --
36.2 0.28 14.5 0.709 1.1 -0.608 0.577 -- 0.481 21.1 59 1562 -- --
37.36 0.285 14.6 0.687 1.1 -0.594 -- 0.0379 0.481 21.1 59.22 1567 -- --
37.08 0.284 14.5 0.689 1.13 -0.49 -- -- 0.502 21.2 71.65 1198 -- --
104.47 0.479 14.5 0.591 -- -0.549 -- 0.306 0.52 -- 74 1498 -- --
41.52 0.302 14.5 0.6 1.09 -- 0.522 -- 0.559 21 -- -- -- --
42.46 0.305 14.5 0.582 1.08 -- -- -- 0.559 21 -- -- -- --
89.63 0.441 14.5 0.552 -- 0.901 -- -- 0.541 -- 100.1 696 -- --
36.82 0.283 14.5 -- 1.1 -0.656 -- -- 0.455 20.7 63.05 26990 -- --
109.81 0.49 14.5 0.583 -- -- -- -- 0.552 -- -- -- -- --
51.39 0.335 14.5 -- 1.08 -- -- -- 0.494 21 -- -- -- --
97.48 0.46 14.5 -- -- 0.923 -- -- 0.478 -- 378.3 712 -- --
118.77 0.509 14.5 -- -- -- -- -- 0.487 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.46 temperature 20.0 14400 < th dose independent rect. 21 1
2 32.49 temperature 20.0 14400 > th dose independent rect. 21 1
4 32.64 radiation 20.0 43200 > th dose independent rect. 9 1
8 32.80 wind 9.0 43200 < th dose independent rect. 9 6
9 32.81 wind 7.0 43200 > th dose dependent rect. 10 4
13 32.86 wind 9.0 43200 < th dose independent rect. 10 4
24 33.08 precipitation 0.1 43200 > th dose dependent rect. 15 6
27 33.10 wind 9.0 43200 > th dose independent rect. 9 6
28 33.11 precipitation 0.1 43200 > th dose dependent rect. 16 3
33 33.14 radiation 30.0 43200 < th dose dependent rect. 9 1
35 33.16 wind 9.0 43200 < th dose independent rect. 10 21
37 33.18 wind 9.0 43200 < th dose independent rect. 9 14
40 33.18 precipitation 0.1 43200 > th dose dependent rect. 18 3
41 33.19 precipitation 0.1 43200 < th dose independent rect. 16 2
42 33.19 precipitation 0.1 43200 < th dose dependent rect. 16 2
55 33.22 wind 9.0 43200 < th dose independent rect. 9 9
58 33.23 precipitation 0.1 43200 > th dose independent rect. 16 2
83 33.27 wind 9.0 43200 > th dose independent rect. 10 4
90 33.28 wind 9.0 43200 < th dose independent sin 22 NA
98 33.29 wind 9.0 43200 > th dose independent rect. 10 21
122 33.32 wind 7.0 43200 > th dose dependent rect. 9 7
126 33.33 wind 9.0 43200 > th dose independent rect. 9 14
146 33.35 radiation 40.0 43200 > th dose dependent rect. 10 2
169 33.38 wind 9.0 43200 > th dose independent rect. 9 9
175 33.39 wind 9.0 43200 < th dose independent rect. 20 22
194 33.40 wind 9.0 43200 < th dose independent rect. 5 17
201 33.40 radiation 10.0 43200 > th dose dependent rect. 11 1
208 33.41 radiation 10.0 43200 < th dose dependent rect. 12 1
238 33.46 wind 9.0 43200 > th dose independent sin 22 NA
241 33.46 wind 9.0 43200 < th dose independent rect. 5 13
255 33.47 wind 7.0 43200 > th dose dependent rect. 10 20
256 33.48 radiation 20.0 43200 < th dose independent rect. 9 3
265 33.49 radiation 30.0 43200 > th dose independent rect. 11 1
325 33.53 wind 9.0 43200 > th dose independent rect. 20 22
348 33.55 wind 7.0 43200 > th dose dependent rect. 9 14
350 33.55 wind 7.0 43200 > th dose dependent rect. 9 17
352 33.56 radiation 20.0 43200 > th dose independent sin 8 NA
368 33.57 radiation 20.0 43200 < th dose independent rect. 11 1
383 33.58 wind 9.0 43200 < th dose independent no NA NA
386 33.58 wind 9.0 43200 > th dose independent rect. 4 18
439 33.62 wind 9.0 43200 < th dose independent rect. 17 23
501 33.66 wind 7.0 43200 > th dose dependent sin 22 NA
586 33.70 wind 9.0 43200 < th dose independent sin 15 NA
593 33.70 wind 7.0 43200 > th dose independent rect. 15 23
618 33.71 wind 7.0 43200 > th dose dependent rect. 4 18
638 33.73 wind 9.0 43200 > th dose independent rect. 14 17
645 33.73 wind 9.0 43200 > th dose dependent sin 17 NA
646 33.73 wind 7.0 43200 > th dose dependent rect. 11 2
654 33.73 wind 7.0 43200 > th dose dependent rect. 19 23
656 33.74 wind 9.0 43200 > th dose independent no NA NA
772 33.79 wind 9.0 43200 > th dose independent rect. 17 23
782 33.80 wind 9.0 43200 > th dose independent sin 15 NA
800 33.80 wind 7.0 43200 > th dose dependent rect. 15 15
835 33.82 wind 7.0 43200 > th dose dependent no NA NA
846 33.82 wind 7.0 43200 > th dose dependent rect. 15 23
883 33.84 wind 7.0 43200 > th dose dependent rect. 17 23
885 33.85 wind 7.0 43200 < th dose independent rect. 19 1
938 33.86 wind 7.0 43200 > th dose dependent rect. 4 14