Os02g0773200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Universal stress protein (Usp) family protein.
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Os02g0773200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Universal stress protein (Usp) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 422.65 | 0.966 | 6.33 | -2.23 | 0.415 | -4.7 | 2.39 | -3.29 | 0.286 | 9.92 | 0.7191 | 1607 | 18.7 | -- |
| 430.08 | 0.966 | 6.35 | -2.48 | 0.408 | -4.02 | 2.53 | -- | 0.269 | 10.2 | 0.7183 | 1609 | 18.6 | -- |
| 443.25 | 0.981 | 6.33 | -2.11 | 0.441 | -4.81 | -- | -3.74 | 0.281 | 8.46 | 0.6998 | 1609 | 18.7 | -- |
| 453.03 | 0.991 | 6.35 | -2.41 | 0.458 | -4.03 | -- | -- | 0.261 | 8.67 | 0.72 | 1611 | 18.9 | -- |
| 449.82 | 0.988 | 6.35 | -2.06 | -- | -4.67 | -- | -3.51 | 0.302 | -- | 0.6905 | 1609 | 18 | -- |
| 612.3 | 1.16 | 6.27 | -1.46 | 0.538 | -- | 2.18 | -- | 0.766 | 11 | -- | -- | -- | -- |
| 632.32 | 1.18 | 6.26 | -1.37 | 0.527 | -- | -- | -- | 0.774 | 11.2 | -- | -- | -- | -- |
| 462.13 | 1 | 6.35 | -2.32 | -- | -3.91 | -- | -- | 0.31 | -- | 0.7189 | 1613 | 18.2 | -- |
| 565.7 | 1.11 | 6.34 | -- | 0.462 | -2.79 | -- | -- | 0.506 | 8.93 | 1.55 | 1586 | 18.4 | -- |
| 649.64 | 1.19 | 6.27 | -1.38 | -- | -- | -- | -- | 0.77 | -- | -- | -- | -- | -- |
| 681.74 | 1.22 | 6.23 | -- | 0.54 | -- | -- | -- | 0.927 | 11.4 | -- | -- | -- | -- |
| 567.69 | 1.11 | 6.35 | -- | -- | -3.04 | -- | -- | 0.516 | -- | 1.55 | 1572 | 16.7 | -- |
| 700.03 | 1.23 | 6.24 | -- | -- | -- | -- | -- | 0.923 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 442.55 | radiation | 1 | 1440 | < th | dose dependent | sin | 1 | NA |
| 3 | 444.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 14 |
| 6 | 444.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 16 | 445.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 17 | 447.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 18 |
| 51 | 447.61 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 57 | 447.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 64 | 447.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 92 | 448.68 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 93 | 448.69 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 118 | 449.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 119 | 449.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 122 | 450.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 123 | 450.25 | radiation | 1 | 1440 | < th | dose independent | sin | 1 | NA |
| 131 | 450.84 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 136 | 451.38 | radiation | 1 | 1440 | > th | dose independent | sin | 1 | NA |
| 144 | 451.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 147 | 451.93 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 148 | 451.97 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 16 |
| 151 | 452.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 153 | 452.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 18 |
| 162 | 452.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 173 | 452.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 181 | 452.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 187 | 452.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 204 | 452.50 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 219 | 452.74 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 223 | 452.94 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 243 | 453.44 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 255 | 453.56 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 258 | 453.66 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 259 | 453.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 261 | 453.71 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 328 | 454.89 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 476 | 459.08 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 519 | 460.01 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 538 | 460.47 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 567 | 461.43 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 722 | 466.96 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 739 | 467.75 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 788 | 470.16 | humidity | 90 | 720 | > th | dose dependent | sin | 21 | NA |
| 801 | 470.90 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 828 | 472.03 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 941 | 473.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 944 | 473.98 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 11 |