BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0218200 Os03g0218200|AK073971
(118 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0218200 Cyclin-like F-box domain containing protein 244 1e-65
Os03g0217200 Cyclin-like F-box domain containing protein 125 7e-30
Os09g0506700 Cyclin-like F-box domain containing protein 97 2e-21
Os05g0538200 85 1e-17
Os03g0202500 Cyclin-like F-box domain containing protein 84 2e-17
Os05g0532300 84 3e-17
Os05g0535200 Cyclin-like F-box domain containing protein 83 4e-17
Os09g0325220 Cyclin-like F-box domain containing protein 82 8e-17
Os09g0500000 Leucine-rich repeat 2 containing protein 82 8e-17
Os05g0575400 Cyclin-like F-box domain containing protein 82 1e-16
Os09g0500100 Cyclin-like F-box domain containing protein 82 1e-16
Os09g0506300 Cyclin-like F-box domain containing protein 77 4e-15
Os06g0142100 Cyclin-like F-box domain containing protein 76 6e-15
Os04g0479800 Cyclin-like F-box domain containing protein 74 2e-14
Os09g0502900 Conserved hypothetical protein 72 1e-13
Os08g0552900 Cyclin-like F-box domain containing protein 67 2e-12
Os09g0503700 Leucine-rich repeat 2 containing protein 64 2e-11
Os10g0384600 Cyclin-like F-box domain containing protein 62 1e-10
>Os03g0218200 Cyclin-like F-box domain containing protein
Length = 118
Score = 244 bits (622), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MPPISRLDPRYHRARGLHELNRLMSLRREQRRLQIETYQFLAQCAKRKESPCQQDNSQCV 60
MPPISRLDPRYHRARGLHELNRLMSLRREQRRLQIETYQFLAQCAKRKESPCQQDNSQCV
Sbjct: 1 MPPISRLDPRYHRARGLHELNRLMSLRREQRRLQIETYQFLAQCAKRKESPCQQDNSQCV 60
Query: 61 KRMRYSGPDLPEDIWHHIHSLLPLQDAARAACVSQAFLRFWRWWIHQLALANSSTLDT 118
KRMRYSGPDLPEDIWHHIHSLLPLQDAARAACVSQAFLRFWRWWIHQLALANSSTLDT
Sbjct: 61 KRMRYSGPDLPEDIWHHIHSLLPLQDAARAACVSQAFLRFWRWWIHQLALANSSTLDT 118
>Os03g0217200 Cyclin-like F-box domain containing protein
Length = 511
Score = 125 bits (314), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 69/87 (79%)
Query: 16 GLHELNRLMSLRREQRRLQIETYQFLAQCAKRKESPCQQDNSQCVKRMRYSGPDLPEDIW 75
GL LNRLMS++REQR QIE + LA KRK SPC+QDNS+C KR RYS PDLPEDIW
Sbjct: 2 GLLGLNRLMSIQREQRCRQIEANRLLASTDKRKGSPCKQDNSRCSKRERYSQPDLPEDIW 61
Query: 76 HHIHSLLPLQDAARAACVSQAFLRFWR 102
HIHSLL LQDAARAACVS+AFL WR
Sbjct: 62 RHIHSLLSLQDAARAACVSRAFLCLWR 88
>Os09g0506700 Cyclin-like F-box domain containing protein
Length = 504
Score = 97.1 bits (240), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/89 (58%), Positives = 64/89 (71%), Gaps = 8/89 (8%)
Query: 16 GLHELNRLMSLRREQRRLQIETYQFLAQCAKRKESPCQQ-DNSQCVKRMRYSGPDLPEDI 74
GL L RLMS+++E+R +Q A+ AKRK S C Q NS+ K M YSG +LPEDI
Sbjct: 2 GLLVLKRLMSVQQERRHIQ-------ARMAKRKGSVCLQLANSEGGKIMGYSGLNLPEDI 54
Query: 75 WHHIHSLLPLQDAARAACVSQAFLRFWRW 103
W HIHSL+PL+DAARAACVS+AF FWR+
Sbjct: 55 WSHIHSLMPLRDAARAACVSRAFRSFWRY 83
>Os05g0538200
Length = 592
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 41 LAQCAKRKESPCQQ-DNSQCVKRMRYSGPDLPEDIWHHIHSLLPLQDAARAACVSQAFLR 99
+ AKRK + + D+SQ KR+RYSGP L EDIW HIHSL+PL+DAARAACVSQAFLR
Sbjct: 29 ITSMAKRKGTFLRGGDSSQGAKRLRYSGPYLTEDIWRHIHSLMPLRDAARAACVSQAFLR 88
Query: 100 FWRWW 104
WR +
Sbjct: 89 SWRRY 93
>Os03g0202500 Cyclin-like F-box domain containing protein
Length = 510
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 61/92 (66%), Gaps = 6/92 (6%)
Query: 17 LHELNRLMSLRREQRRLQIETYQF-----LAQCAKRKESPCQQ-DNSQCVKRMRYSGPDL 70
L +L RLMS+ +E+ R + + + AKRK S CQQ NS +R RYSGP+L
Sbjct: 4 LLDLKRLMSVPKERNRRRRQRQIRARNGSIDSVAKRKGSLCQQVANSDGERRTRYSGPNL 63
Query: 71 PEDIWHHIHSLLPLQDAARAACVSQAFLRFWR 102
PEDIW HIHSL+P +DAARAACVS AF R W+
Sbjct: 64 PEDIWCHIHSLMPFKDAARAACVSHAFRRSWQ 95
>Os05g0532300
Length = 669
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 45 AKRKESPCQQ--DNSQCVKRMRYSGPDLPEDIWHHIHSLLPLQDAARAACVSQAFLRFWR 102
AKRK SPCQQ D++Q KRMR LPEDIW+HIHSLLPL+DAARAACVS FL WR
Sbjct: 39 AKRKGSPCQQEEDDNQDAKRMRNPRVSLPEDIWYHIHSLLPLRDAARAACVSSTFLYSWR 98
>Os05g0535200 Cyclin-like F-box domain containing protein
Length = 402
Score = 82.8 bits (203), Expect = 4e-17, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 20 LNRLMSLRREQRRLQIETYQFLAQCAKRKESPCQQ-DNSQCVKRMRYSGPDLPEDIWHHI 78
+ R+ S+ R Q + + + +A AKR SPCQQ D+ + K M LPEDIW+HI
Sbjct: 4 VERITSMPRRQVQARDGS---VASLAKRTGSPCQQEDDYEGAKTMTNPWTFLPEDIWYHI 60
Query: 79 HSLLPLQDAARAACVSQAFLRFWRW 103
HSLLPL+DAAR ACVS FLR WR+
Sbjct: 61 HSLLPLKDAARTACVSHTFLRSWRY 85
>Os09g0325220 Cyclin-like F-box domain containing protein
Length = 525
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 41 LAQCAKRKESPCQQDNS-QCVKRMRYSGPDLPEDIWHHIHSLLPLQDAARAACVSQAFLR 99
+A KRK S QQD+S + K+MRYSGPDLPE++W HIHSL+P++DAAR AC+S AFL
Sbjct: 30 IASPEKRKGSCYQQDDSPRSSKKMRYSGPDLPEEMWQHIHSLMPMKDAARVACLSSAFLY 89
Query: 100 FWR 102
WR
Sbjct: 90 SWR 92
>Os09g0500000 Leucine-rich repeat 2 containing protein
Length = 269
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 45 AKRKESPCQQDN-SQCVKRMRYSGPDLPEDIWHHIHSLLPLQDAARAACVSQAFLRFWRW 103
AKRK + Q D+ SQ KR+RYS P L EDIW HIHSL+PL+DAARAAC+SQAFLR WR
Sbjct: 2 AKRKGAFLQGDDTSQGGKRLRYSEPYLTEDIWRHIHSLMPLRDAARAACISQAFLRSWRR 61
Query: 104 WIHQLALANSSTLD 117
+ + + A + L+
Sbjct: 62 YPNLILTAGTLGLE 75
>Os05g0575400 Cyclin-like F-box domain containing protein
Length = 377
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Query: 45 AKRKESPCQQDNSQCVKRMRYSGPD--LPEDIWHHIHSLLPLQDAARAACVSQAFLRFWR 102
KRK SPCQ +S+ VK MR S P LPEDIWHHIHSL+P++DAARAAC+S+ FL+ WR
Sbjct: 24 CKRKGSPCQHGDSRAVKTMRRSTPYPCLPEDIWHHIHSLMPMRDAARAACLSRTFLQSWR 83
>Os09g0500100 Cyclin-like F-box domain containing protein
Length = 379
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 61 KRMRYSGPDLPEDIWHHIHSLLPLQDAARAACVSQAFLRFWR 102
KR+RYSGPDLPEDIW HIH L+PL+DAARAAC+SQAFLR WR
Sbjct: 55 KRLRYSGPDLPEDIWRHIHFLMPLRDAARAACISQAFLRSWR 96
>Os09g0506300 Cyclin-like F-box domain containing protein
Length = 304
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 45 AKRKESPCQQ-DNSQCVKRMRYSGPDLPEDIWHHIHSLLPLQDAARAACVSQAFLRFWR 102
AKRK S CQQ NS+ K+ RYSG DLPE+IW HIHSL+ +DAARA CVS+AF R W+
Sbjct: 76 AKRKGSLCQQVANSEGNKKTRYSGLDLPEEIWCHIHSLMAFKDAARATCVSRAFHRSWQ 134
>Os06g0142100 Cyclin-like F-box domain containing protein
Length = 512
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 62/88 (70%), Gaps = 3/88 (3%)
Query: 16 GLHELNRLMSLRREQRRLQIETYQFLAQCAKRKESPCQQD-NSQCVKRMRYSGPDLPEDI 74
G+ L RLMS++R +R++Q+ +A AKRK SPCQQD +SQ + PDLPEDI
Sbjct: 2 GMLNLMRLMSVKRRRRQVQVPHDGLIALRAKRKCSPCQQDGDSQGAADIEI--PDLPEDI 59
Query: 75 WHHIHSLLPLQDAARAACVSQAFLRFWR 102
W IHSL+P++ AARAACVS++FL WR
Sbjct: 60 WRLIHSLMPMRAAARAACVSRSFLSSWR 87
>Os04g0479800 Cyclin-like F-box domain containing protein
Length = 518
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 60/98 (61%), Gaps = 11/98 (11%)
Query: 16 GLHELNRLMSLRREQRRLQIETY-------QFLAQCAKRKESPCQQDN----SQCVKRMR 64
G+ LN LMSLRR++RR + +A KRK SPCQQD+ SQ K MR
Sbjct: 2 GMLALNGLMSLRRDRRRRRRHHRPQIRARCGLIASTGKRKTSPCQQDDYDGDSQAGKIMR 61
Query: 65 YSGPDLPEDIWHHIHSLLPLQDAARAACVSQAFLRFWR 102
S PDLPEDI I S + +++AARAACVS+AFL WR
Sbjct: 62 NSIPDLPEDILFRIQSFMSMREAARAACVSRAFLHSWR 99
>Os09g0502900 Conserved hypothetical protein
Length = 348
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 41 LAQCAKRKESPCQQDN-SQCVKRMRYSGPDLPEDIWHHIHSLLPLQDAARAACVSQAFLR 99
+A+ KRK SP QQD+ SQ KRM+ SG L +DIW IH L+P++DAAR ACVS+AFL
Sbjct: 32 IAKLGKRKFSPSQQDDDSQGAKRMKNSGMLLSKDIWRRIHCLMPMRDAARVACVSRAFLN 91
Query: 100 FW 101
W
Sbjct: 92 SW 93
>Os08g0552900 Cyclin-like F-box domain containing protein
Length = 480
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 39/48 (81%), Gaps = 3/48 (6%)
Query: 55 DNSQCVKRMRYSGPDLPEDIWHHIHSLLPLQDAARAACVSQAFLRFWR 102
D+SQ VK + PDLPEDIW H+HSL+PL+DAARAAC+S+AFL WR
Sbjct: 122 DDSQAVKA---TIPDLPEDIWCHVHSLMPLRDAARAACLSRAFLHSWR 166
>Os09g0503700 Leucine-rich repeat 2 containing protein
Length = 242
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 45/60 (75%)
Query: 45 AKRKESPCQQDNSQCVKRMRYSGPDLPEDIWHHIHSLLPLQDAARAACVSQAFLRFWRWW 104
AKRK SPCQQD+ + SG DL EDI+ +IHSL+PL+DAARAACVS +FLR WR +
Sbjct: 15 AKRKGSPCQQDDDCQDDKRIRSGADLLEDIFWYIHSLMPLRDAARAACVSHSFLRSWRCY 74
>Os10g0384600 Cyclin-like F-box domain containing protein
Length = 553
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 35/49 (71%), Gaps = 4/49 (8%)
Query: 70 LPEDIWHHIHSLLPLQDAARAACVSQAFLRFWRWW----IHQLALANSS 114
LPEDIW HIHS +P++DAARAACVS FLRFWR + I Q L SS
Sbjct: 47 LPEDIWQHIHSRMPMRDAARAACVSHRFLRFWRGYPTVTIDQETLGLSS 95
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.134 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,182,373
Number of extensions: 152552
Number of successful extensions: 677
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 20
Length of query: 118
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 33
Effective length of database: 12,597,611
Effective search space: 415721163
Effective search space used: 415721163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)