Os04g0479800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os04g0479800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.95 | 0.571 | 6.7 | -0.965 | 0.763 | 1.29 | 0.708 | 0.186 | -0.521 | 14.5 | 20.6 | 926 | -- | -- |
| 148.02 | 0.567 | 6.71 | -1.01 | 0.76 | 1.28 | 0.658 | -- | -0.529 | 14.5 | 20.58 | 942 | -- | -- |
| 149.56 | 0.57 | 6.7 | -1 | 0.77 | 1.31 | -- | 0.0381 | -0.529 | 14.3 | 20.59 | 942 | -- | -- |
| 149.54 | 0.57 | 6.71 | -0.994 | 0.767 | 1.3 | -- | -- | -0.531 | 14.3 | 20.56 | 942 | -- | -- |
| 177.14 | 0.62 | 6.67 | -0.9 | -- | 1.22 | -- | 0.403 | -0.472 | -- | 20.48 | 433 | -- | -- |
| 191.44 | 0.649 | 6.65 | -0.506 | 0.647 | -- | 1.13 | -- | -0.245 | 15.4 | -- | -- | -- | -- |
| 195.25 | 0.654 | 6.64 | -0.485 | 0.649 | -- | -- | -- | -0.238 | 15.1 | -- | -- | -- | -- |
| 177.1 | 0.62 | 6.7 | -0.896 | -- | 1.15 | -- | -- | -0.493 | -- | 20.45 | 425 | -- | -- |
| 171.61 | 0.61 | 6.67 | -- | 0.742 | 0.972 | -- | -- | -0.36 | 14.4 | 20.52 | 860 | -- | -- |
| 219.37 | 0.692 | 6.65 | -0.513 | -- | -- | -- | -- | -0.255 | -- | -- | -- | -- | -- |
| 201.46 | 0.664 | 6.63 | -- | 0.659 | -- | -- | -- | -0.184 | 15.1 | -- | -- | -- | -- |
| 195.03 | 0.65 | 6.66 | -- | -- | 0.884 | -- | -- | -0.338 | -- | 20.49 | 194 | -- | -- |
| 226.31 | 0.702 | 6.63 | -- | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 2 | 147.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 7 |
| 6 | 147.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 9 | 147.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 10 | 147.60 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 15 | 147.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 7 |
| 16 | 147.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 26 | 148.13 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 30 | 148.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 38 | 148.41 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 43 | 148.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 50 | 148.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 75 | 149.13 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 17 |
| 81 | 149.29 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 83 | 149.35 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 15 |
| 84 | 149.35 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 19 |
| 92 | 149.55 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 96 | 149.59 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 98 | 149.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 104 | 149.64 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 22 |
| 117 | 149.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 121 | 149.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 123 | 149.78 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 124 | 149.80 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 169 | 150.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 183 | 150.34 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 198 | 150.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 235 | 150.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 244 | 150.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 260 | 151.07 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 21 |
| 282 | 151.17 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 22 |
| 291 | 151.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 296 | 151.25 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 303 | 151.30 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 346 | 151.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 348 | 151.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 351 | 151.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 358 | 151.66 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 379 | 151.76 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 414 | 151.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 415 | 151.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 450 | 152.08 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 474 | 152.17 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 490 | 152.25 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 23 |
| 499 | 152.30 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 509 | 152.33 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 23 |
| 525 | 152.43 | temperature | 20 | 720 | < th | dose independent | rect. | 14 | 23 |
| 528 | 152.44 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 23 |
| 584 | 152.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 630 | 152.72 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 798 | 153.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 831 | 153.45 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 889 | 153.64 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 904 | 153.69 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 998 | 154.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |