BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0479800 Os04g0479800|AK121430
(518 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G56380.1 | chr5:22838836-22840353 REVERSE LENGTH=440 59 7e-09
AT3G49030.1 | chr3:18173138-18174769 FORWARD LENGTH=444 54 2e-07
AT1G13570.1 | chr1:4642528-4643930 REVERSE LENGTH=417 53 4e-07
AT5G02700.1 | chr5:609381-611679 REVERSE LENGTH=457 51 1e-06
AT3G52680.1 | chr3:19527075-19528838 FORWARD LENGTH=457 50 4e-06
AT3G28410.1 | chr3:10640152-10642071 REVERSE LENGTH=466 49 5e-06
>AT5G56380.1 | chr5:22838836-22840353 REVERSE LENGTH=440
Length = 439
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 180/418 (43%), Gaps = 52/418 (12%)
Query: 62 NSIPDLPEDILFRIQSFMSMREAARAACVSRAFLHSWRCHPNLIFNKDTIVLKRNAFGE- 120
+ I L ++IL +I SF+ ++ + +S+ F W P L F+ T + + + E
Sbjct: 2 DRISHLADEILSKILSFLGTKDVMQTMLLSKRFKSQWLLVPKLEFDDSTHLPETWGYQEP 61
Query: 121 ---NFHGKIGRILRNHSGISLKTFQLDYSGMCGFDGTSYLDSWLQIALKPEIEELTLFLP 177
NF + R L + G L+T L C +D + W+ IA+K + EL L
Sbjct: 62 DYGNFRRFVDRSLLSREGRVLQTLFLKLGRQCSYDDIAI---WVGIAVKRGLMELKLKYT 118
Query: 178 ETN--KQYSFPCSLLSDGVRDSLRYIKLRCCALHPTPELGPLRNLSNLHLLYVSITWAEL 235
++ K+ S P SL + ++L +KL+ L P+L LR+L L L + ++
Sbjct: 119 DSYYPKRSSLPRSLYTC---ETLVVLKLKKGYLD-VPDLVCLRSLKTLSL--RDMNYSNA 172
Query: 236 ECLLS--------NSLALEHLELNHC----KGII-CLK----IPCTLQQLSSLNVVECS- 277
CLL L ++ + C K I+ CLK +P ++ S ++ E S
Sbjct: 173 SCLLRLLASCPVLEELFIQQGYYDSCALSFKIILPCLKKLSYLPKRKKKYSGIDRSEVSG 232
Query: 278 GLKVIESKAPNLSSLFVRGSRVNFSLVETLQINKLDMGHAICDARAKLPSIMPNLETLV- 336
G+ + AP+L L + FS+ E + IN + A + A P + L +LV
Sbjct: 233 GISGLVLDAPSLKYLHIVDRSGLFSVSEIININA--VVKATLEVNASRPEKL--LYSLVS 288
Query: 337 IE------SGHEVVDAPMLPTKFLYLKHLTIHVITGSTISQPYDYFSLVSFIDASPSLET 390
+E S EVV L + F LK L + + S+ D F + ++ SPSL+
Sbjct: 289 VEHIRLCLSATEVVYPVGLGSSFHKLKRLEV----CTCKSEWLDLF--IHLLEDSPSLQD 342
Query: 391 LILNVTQVRMVHESIFTDSQLRHIPGHRHGHLKSVKITGFSSAKSLVELTCYILNNAV 448
+ +N Q V +Q +P L++++ + EL+ Y+ AV
Sbjct: 343 IKIN--QCHPVTNPRPQWNQPGSVPRCLSSSLETLEWVEYGGTHEEKELSTYLFKTAV 398
>AT3G49030.1 | chr3:18173138-18174769 FORWARD LENGTH=444
Length = 443
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 184/417 (44%), Gaps = 44/417 (10%)
Query: 59 IMRNSIPDLPEDILFRIQSFMSMREAARAACVSRAFLHSWRCHPNLIFNKDTIVLKRNAF 118
+ + I +LPED+L +I S + + +S+ + W+ PNL F+ F
Sbjct: 18 VKEDRISELPEDLLLQILSDIPTENVIATSVLSKRWRSLWKMVPNLTFDFTFDPKYHQTF 77
Query: 119 GENFHGKIGRILRNHSGISLKTFQLDYSGMCGFDGTSYLDSWLQIALKPEIEELTL--FL 176
EN + R L +H L++ QL+++ G DG + + W+ A + +L L F
Sbjct: 78 SENLY----RSLTSHEASVLESLQLNFTR--GIDGLN-IGMWIATAYVRHVRKLVLVSFG 130
Query: 177 PETNKQYSFPCSLLSDGVRDSLRYIKLRCCALHPTPELGPLRNLSNLHLLYVSITWAELE 236
+K+ F +L + D+L ++++ L P L++L L L V
Sbjct: 131 DVRDKRARFRSALFN--FNDTLDILEIQDYILLDLPSPVCLKSLRELRLYEVHFKDEASV 188
Query: 237 C-LLSNSLALE----HLELNHCKGIICLKIPCTLQQLSSLNVVECSGLKVIESKAPNLSS 291
C LL +LE H E N + +P +LQ+L+ + G AP+L
Sbjct: 189 CNLLCGCPSLEVLSVHRERNVDVETFTIVVP-SLQRLTIYDFCIGGGKGGYVINAPSLKY 247
Query: 292 LFVRGSR-VNFSLVET----LQINKLDMGHAICDARAKLPSIMPNLETLVIESGHEVVDA 346
L + G ++F L+E ++ D+ H A + + +++ L +ES ++
Sbjct: 248 LNIVGFEGLDFCLIENAPELVEAEISDVSHI---ANENILESLTSVKRLSLESPIKI--- 301
Query: 347 PMLPTKFLYLKHLTIHVITGSTISQPYDYFSLVS-FIDASPSLETLILNVTQVRMVHESI 405
PT ++ + + + V+T + ++++L+S +++SP L+ IL +T + + + +
Sbjct: 302 -KFPTGKVFDQLVYLDVLT-----KEREWWNLLSRMLESSPKLQ--ILKLTGLSCIEKGL 353
Query: 406 FTDSQLRH----IPGHRHGHLKSVKITGFSSAK-SLVELTCYILNNAVSLECLTLDT 457
D Q + +P HL+ TG+ + E+ YIL NA L+ T T
Sbjct: 354 --DGQNWNPPKCVPECLLFHLEKFLWTGYEWQRGDEKEVATYILENARLLKKATFST 408
>AT1G13570.1 | chr1:4642528-4643930 REVERSE LENGTH=417
Length = 416
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 97/422 (22%), Positives = 169/422 (40%), Gaps = 69/422 (16%)
Query: 62 NSIPDLPEDILFRIQSFMSMREAARAACVSRAFLHSWRCHPNLIFNKDTIVLK--RNAFG 119
+ I DLP+ I+ I + +S+R+A R + +S + + W +L+F++ + R
Sbjct: 6 DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSNDRCVVE 65
Query: 120 ENFHGKIGRILRNHSGISLKTFQLDYS-GMCGFDGTSYLDSWLQIALKPEIEELTLFLPE 178
N I +L H G + FQL S C D +D WL + I+EL L L E
Sbjct: 66 TNLVRFITGVLLLHQG-PIHKFQLSTSFKQCRPD----IDQWLLFLSRNGIKELVLKLGE 120
Query: 179 TNKQYSFPCSLLSDGVRDSLRYIKLRC-----CALHPTPELGPLRNLSNLHLLYVSITWA 233
++ P L + +KL C C P L +L+L + +
Sbjct: 121 --GEFRVPACLFN--------CLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPE 170
Query: 234 ELECLLSNSLALEHLELNHCKGIICLKIPCTLQQLSSLNVVECSGLKVIESKAPNLSSLF 293
+E L+S LE L L++ + V+ APNL L+
Sbjct: 171 VIESLISGCPLLEFLSLSYFDSL------------------------VLSISAPNLMYLY 206
Query: 294 VRGSRVNFSLVETLQINKLD----MGHAICDAR-------AKLPSIMPNLETLV----IE 338
+ G + L T ++ + M + D K +P LE LV
Sbjct: 207 LDGEFKDIFLENTPKLVAISVSMYMHEDVTDFEQSSDYNLVKFLGGVPLLEKLVGYIYFT 266
Query: 339 SGHEVVDAP-MLPTKFLYLKHLTIHVITGSTISQPYDYFSLVSFIDASPSLETLILNVTQ 397
+ D P LP +++LK + ++ + + L+ + SP+L+ L ++ +
Sbjct: 267 KYLSIGDDPGRLPLTYIHLKTIELYQVCFEDADE---VLVLLRLVTHSPNLKELKVSASP 323
Query: 398 VR--MVHESIFTDSQLRHIPGHRHGHLKSVKITGFSSAKSLVELTCYILNNAVSLECLTL 455
V+ + E F D R ++ L+SVKIT S + +E ++L + LE +T+
Sbjct: 324 VQPFPLEEEGF-DLFERDYFDYKLPSLESVKITDASGIRYELEFIRFLLGTSPVLETVTV 382
Query: 456 DT 457
+
Sbjct: 383 SS 384
>AT5G02700.1 | chr5:609381-611679 REVERSE LENGTH=457
Length = 456
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 21/191 (10%)
Query: 67 LPEDILFRIQSFMSMREAARAACVSRAFLHSWRCHPNLIFNKDTIVLKRNAFGENFHGKI 126
+P+DIL I SF+ A R + +SR + H W P L I LK HG +
Sbjct: 32 MPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCL-----DITLK--------HGAM 78
Query: 127 GRILRNHSGISLKTFQLDYSGMCGFDGTSYLDSWLQIALKPEIEELTLFLPE--TNKQYS 184
+ L +++ + +F+L + +DSW++ AL ++ L++F+ + +K Y
Sbjct: 79 NQTLTSYTAPIITSFKLVMD--LNSNTVPQVDSWIEFALSRNVQNLSVFVRDFTYSKTYR 136
Query: 185 FP-CSLLSDGVRDSLRYIKLRCCALHPTPELGPLRNLSNLHLLYVSITWAELECLLSNSL 243
FP LS ++ L + L + PT + ++L NL L + I + +LS
Sbjct: 137 FPDIFYLSSSLK--LLDVTLDFFDMIPTCTVS-WKSLRNLTLRFCQIPDESIHNILSGCP 193
Query: 244 ALEHLELNHCK 254
LE L L+ C+
Sbjct: 194 ILESLTLDTCR 204
>AT3G52680.1 | chr3:19527075-19528838 FORWARD LENGTH=457
Length = 456
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 21/218 (9%)
Query: 61 RNSIPDLPEDILFRIQSFMSMREAARAACVSRAFLHSWRCHPNLIFNKDTIVLKRNAFGE 120
++ I +LP+ +L +I S + + +S+ + W+ PNL F+ D + F E
Sbjct: 20 KDRISELPDGLLLKILSSLPTNIVVATSVLSKQWRSLWKLVPNLEFDSDDYESEHYTFSE 79
Query: 121 NFHGKIGRILRNHSGISLKTFQLDYSGMCGFDGTSYLDSWLQIALKPEIEELTL-FLP-E 178
+ + +H L++F+L + D + W+ IA + EL L F P E
Sbjct: 80 ----IVCKSFLSHKAPVLESFRLKFVNFNPVD----IGLWVGIAFSRHLRELVLDFYPAE 131
Query: 179 TNK--QYSFPCSLLSDGVRDSLRYIKLRCCALHPTPELGPLRNLSNLHLLYVSIT-WAEL 235
K ++FP SL + ++L +KL C L P +++L LHL +V + +
Sbjct: 132 LGKGVTFTFPSSLCT---CNTLETLKLVLCILVDIPSPVLMKSLRTLHLEFVRYKDESSV 188
Query: 236 ECLLSNSLALEHLELNHCKG----IICLKIPCTLQQLS 269
LLS LE L L + +++P +LQ+L+
Sbjct: 189 RNLLSGCPGLEELRLYRGDDSDIKVFTIEVP-SLQRLT 225
>AT3G28410.1 | chr3:10640152-10642071 REVERSE LENGTH=466
Length = 465
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 67 LPEDILFRIQSFMSMREAARAACVSRAFLHSWRCHPNLIFNKDTIVLKRNAFGENFHGKI 126
+P+DIL I SF+ A R + +SR + H W P L I LK HG+
Sbjct: 33 MPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCL-----DIKLK--------HGET 79
Query: 127 GRILRNHSGISLKTFQLDYSGMCGFDGT-SYLDSWLQIALKPEIEELTLFLPE--TNKQY 183
+ L +++ + +F+L M D T +DSW++ AL ++ L++F+ + K Y
Sbjct: 80 NQTLTSYTAPIITSFKL---VMDLNDNTVPQVDSWIEFALSRNVQNLSVFVRDFTYTKTY 136
Query: 184 SFPCSLLSDGVRDSLRYIKLRCCALHPTPELG-PLRNLSNLHLLYVSITWAELECLLSNS 242
FP + SL+ + + P ++L NL L + I + +LS
Sbjct: 137 RFPDIFY---ISSSLKQLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNILSGC 193
Query: 243 LALEHLELNHCK 254
LE L L+ C+
Sbjct: 194 PILESLTLDTCR 205
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,867,323
Number of extensions: 458929
Number of successful extensions: 1435
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1467
Number of HSP's successfully gapped: 12
Length of query: 518
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 415
Effective length of database: 8,282,721
Effective search space: 3437329215
Effective search space used: 3437329215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 114 (48.5 bits)