Os09g0503700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat 2 containing protein.
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Os09g0503700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.73 | 0.42 | 3.42 | 0.0947 | 0.219 | -0.533 | 0.613 | 1.26 | 0.142 | 14.1 | 29.7 | 83 | -- | -- |
| 78.3 | 0.412 | 3.41 | 0.214 | 0.161 | -0.415 | 0.533 | -- | 0.131 | 14 | 29.17 | 43 | -- | -- |
| 79.23 | 0.415 | 3.42 | 0.166 | 0.15 | -0.476 | -- | 0.437 | 0.118 | 13.8 | 29.26 | 42 | -- | -- |
| 79.28 | 0.415 | 3.41 | 0.223 | 0.157 | -0.431 | -- | -- | 0.132 | 14.1 | 29.15 | 43 | -- | -- |
| 80.25 | 0.417 | 3.42 | 0.148 | -- | -0.534 | -- | 0.402 | 0.112 | -- | 29.17 | 43 | -- | -- |
| 85.46 | 0.433 | 3.41 | 0.292 | 0.369 | -- | 0.718 | -- | 0.153 | 14.7 | -- | -- | -- | -- |
| 87.25 | 0.437 | 3.4 | 0.31 | 0.371 | -- | -- | -- | 0.157 | 14.7 | -- | -- | -- | -- |
| 80.41 | 0.418 | 3.41 | 0.201 | -- | -0.509 | -- | -- | 0.125 | -- | 29.2 | 43 | -- | -- |
| 80.56 | 0.418 | 3.41 | -- | 0.141 | -0.458 | -- | -- | 0.107 | 14 | 29.2 | 45 | -- | -- |
| 95.28 | 0.456 | 3.41 | 0.294 | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
| 89.78 | 0.443 | 3.41 | -- | 0.365 | -- | -- | -- | 0.122 | 14.6 | -- | -- | -- | -- |
| 81.46 | 0.42 | 3.42 | -- | -- | -0.522 | -- | -- | 0.103 | -- | 29.1 | 43 | -- | -- |
| 97.56 | 0.461 | 3.41 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.71 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 5 | 77.12 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 25 | 78.39 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 29 | 78.46 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 18 |
| 44 | 78.78 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 20 |
| 47 | 78.88 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 14 |
| 55 | 78.94 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 7 |
| 100 | 79.23 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 111 | 79.28 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 9 |
| 129 | 79.38 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 16 |
| 175 | 79.49 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 22 |
| 176 | 79.50 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 274 | 79.72 | temperature | 30 | 90 | < th | dose independent | rect. | 11 | 22 |
| 298 | 79.79 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 15 |
| 316 | 79.83 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 348 | 79.87 | temperature | 30 | 90 | < th | dose independent | rect. | 23 | 23 |
| 371 | 79.89 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 452 | 80.00 | temperature | 10 | 30 | > th | dose dependent | sin | 22 | NA |
| 480 | 80.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 522 | 80.09 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 558 | 80.18 | temperature | 10 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 600 | 80.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 626 | 80.28 | temperature | 30 | 30 | < th | dose dependent | sin | 21 | NA |
| 627 | 80.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 634 | 80.29 | temperature | 30 | 90 | > th | dose independent | sin | 1 | NA |
| 667 | 80.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 9 |
| 681 | 80.35 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 23 |
| 753 | 80.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 781 | 80.48 | temperature | 30 | 90 | > th | dose independent | rect. | 17 | 23 |
| 857 | 80.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 5 |
| 878 | 80.58 | temperature | 30 | 90 | < th | dose independent | sin | 23 | NA |
| 879 | 80.58 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 2 |
| 892 | 80.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 924 | 80.63 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 22 |
| 950 | 80.65 | temperature | 25 | 30 | > th | dose dependent | rect. | 16 | 18 |
| 967 | 80.67 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 1 |