BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0503700 Os09g0503700|AK068071
         (242 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59200.1  | chr3:21887484-21889214 FORWARD LENGTH=521           50   1e-06

>AT3G59200.1 | chr3:21887484-21889214 FORWARD LENGTH=521
          Length = 520

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 83/200 (41%), Gaps = 37/200 (18%)

Query: 47  YIHSLMPLRDAARAACVSHSFLRSWRCYPYLMFSEELLRLQESAF------SDDERTRNL 100
           +I S +P ++AA  + +S    + WR   YL      L   +S +      SD E +R+ 
Sbjct: 19  HILSFLPTKEAASTSVLS----KKWR---YLFAYVTNLDFDDSDYQDGKPKSDVELSRSF 71

Query: 101 ISKVNHILQNHSGIGVKKLELVFLDSTDVDLSYIDSWLHKAVTRGIEELTLILPINSNAE 160
           +  V+ +L       V K  L    + DVDL+ +  W+   + RG+ EL L     S  E
Sbjct: 72  MEFVDRVLALQGNGSVNKFSLE-CSNYDVDLARVTGWILNVLGRGVSELDL-----SILE 125

Query: 161 YSFPCSLLSDGNGNSIQYLHLSRCAIRPTADLGC--------LRTLTTLHLYSVRIT--G 210
           Y  P  +             L R  + P  DL          L  L TL++  V +   G
Sbjct: 126 YPLPSEIFVSKT--------LVRLKLGPANDLTLTLDRKDVFLPKLKTLYIDCVDVQERG 177

Query: 211 FELEYLLSNSPALEWLIMMD 230
           F    LLS  P LE L++M+
Sbjct: 178 FGFVKLLSGCPVLEELVLMN 197



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,094,620
Number of extensions: 200406
Number of successful extensions: 546
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 3
Length of query: 242
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,474,633
Effective search space: 1237296418
Effective search space used: 1237296418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)