Os03g0217200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os03g0217200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.3 | 0.236 | 11.3 | 0.437 | 0.338 | 0.406 | 0.114 | -0.134 | 0.113 | 20.6 | 20.4 | 908 | -- | -- |
| 25.34 | 0.234 | 11.3 | 0.456 | 0.34 | 0.424 | 0.0819 | -- | 0.117 | 20.6 | 20.42 | 950 | -- | -- |
| 25.34 | 0.234 | 11.3 | 0.437 | 0.342 | 0.411 | -- | -0.0967 | 0.112 | 20.6 | 20.43 | 933 | -- | -- |
| 25.36 | 0.235 | 11.3 | 0.454 | 0.34 | 0.424 | -- | -- | 0.117 | 20.6 | 20.46 | 950 | -- | -- |
| 31.44 | 0.261 | 11.3 | 0.426 | -- | 0.493 | -- | -0.0452 | 0.0981 | -- | 20.4 | 856 | -- | -- |
| 30.09 | 0.257 | 11.3 | 0.624 | 0.385 | -- | 0.0536 | -- | 0.211 | 21 | -- | -- | -- | -- |
| 30.1 | 0.257 | 11.3 | 0.622 | 0.385 | -- | -- | -- | 0.211 | 21 | -- | -- | -- | -- |
| 31.44 | 0.261 | 11.3 | 0.43 | -- | 0.501 | -- | -- | 0.0977 | -- | 20.4 | 856 | -- | -- |
| 29.72 | 0.254 | 11.4 | -- | 0.326 | 0.583 | -- | -- | 0.0488 | 20.5 | 20.1 | 2493 | -- | -- |
| 38.59 | 0.29 | 11.3 | 0.622 | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
| 40.28 | 0.297 | 11.3 | -- | 0.384 | -- | -- | -- | 0.142 | 21.1 | -- | -- | -- | -- |
| 35.69 | 0.278 | 11.3 | -- | -- | 0.634 | -- | -- | 0.034 | -- | 20.5 | 884 | -- | -- |
| 48.8 | 0.326 | 11.3 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.31 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 7 |
| 2 | 24.32 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 3 | 24.34 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 5 |
| 4 | 24.35 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 10 | 24.49 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 11 | 24.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 16 | 24.59 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 18 | 24.59 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 20 | 24.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 30 | 24.70 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 2 |
| 32 | 24.70 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 36 | 24.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 57 | 24.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 75 | 24.84 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 128 | 24.97 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 129 | 24.98 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 156 | 25.04 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 173 | 25.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 190 | 25.09 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 197 | 25.10 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 248 | 25.18 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 249 | 25.18 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 17 |
| 454 | 25.46 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 539 | 25.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 548 | 25.57 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 565 | 25.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 571 | 25.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 639 | 25.67 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 685 | 25.72 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 19 |
| 694 | 25.73 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 21 |
| 728 | 25.75 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 762 | 25.79 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 786 | 25.81 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 23 |
| 792 | 25.82 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 812 | 25.84 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 954 | 25.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 7 |
| 961 | 25.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 973 | 25.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 978 | 25.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 998 | 26.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 7 |